Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACKZ7V_RS09385 Genome accession   NZ_CP176566
Coordinates   1876390..1877262 (+) Length   290 a.a.
NCBI ID   WP_148843527.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IMT37083     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1871390..1882262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKZ7V_RS09365 (ACKZ7V_09365) ylqF 1872226..1873110 (+) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -
  ACKZ7V_RS09370 (ACKZ7V_09370) - 1873094..1873861 (+) 768 WP_111762221.1 ribonuclease HII -
  ACKZ7V_RS09375 (ACKZ7V_09375) sucC 1873970..1875136 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  ACKZ7V_RS09380 (ACKZ7V_09380) sucD 1875158..1876066 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  ACKZ7V_RS09385 (ACKZ7V_09385) dprA 1876390..1877262 (+) 873 WP_148843527.1 DNA-processing protein DprA Machinery gene
  ACKZ7V_RS09390 (ACKZ7V_09390) topA 1877436..1879511 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  ACKZ7V_RS09395 (ACKZ7V_09395) trmFO 1879667..1880974 (+) 1308 WP_111762223.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33258.46 Da        Isoelectric Point: 8.3110

>NTDB_id=1080938 ACKZ7V_RS09385 WP_148843527.1 1876390..1877262(+) (dprA) [Staphylococcus aureus strain IMT37083]
MLNHILFKLIWSRFTTAQIHLLLKTYPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINHLSYPHTLAVVGSRLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1080938 ACKZ7V_RS09385 WP_148843527.1 1876390..1877262(+) (dprA) [Staphylococcus aureus strain IMT37083]
ATGTTAAATCACATTTTATTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTATCC
AAGTTGTTGTGAAGTAGACGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCACCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGCTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.347

100

0.683
  dprA Staphylococcus aureus N315

66.552

100

0.666
  dprA Lactococcus lactis subsp. cremoris KW2

37.413

98.621

0.369
  dprA Vibrio campbellii strain DS40M4

39.114

93.448

0.366

Multiple sequence alignment