Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACK2WG_RS17975 Genome accession   NZ_CP176536
Coordinates   3507649..3508371 (-) Length   240 a.a.
NCBI ID   WP_061186927.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502649..3513371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS17940 (ACK2WG_17940) fliW 3502791..3503222 (-) 432 WP_268455714.1 flagellar assembly protein FliW -
  ACK2WG_RS17945 (ACK2WG_17945) - 3503243..3503818 (-) 576 WP_409509228.1 DUF6470 family protein -
  ACK2WG_RS17950 (ACK2WG_17950) flgL 3503866..3504762 (-) 897 WP_014115346.1 flagellar hook-associated protein FlgL -
  ACK2WG_RS17955 (ACK2WG_17955) flgK 3504772..3506295 (-) 1524 WP_409509229.1 flagellar hook-associated protein FlgK -
  ACK2WG_RS17960 (ACK2WG_17960) flgN 3506314..3506796 (-) 483 WP_014115348.1 flagellar protein FlgN -
  ACK2WG_RS17965 (ACK2WG_17965) flgM 3506811..3507077 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK2WG_RS17970 (ACK2WG_17970) - 3507157..3507576 (-) 420 WP_079288824.1 TIGR03826 family flagellar region protein -
  ACK2WG_RS17975 (ACK2WG_17975) comFC 3507649..3508371 (-) 723 WP_061186927.1 ComF family protein Machinery gene
  ACK2WG_RS17980 (ACK2WG_17980) - 3508335..3508631 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  ACK2WG_RS17985 (ACK2WG_17985) comFA 3508700..3510082 (-) 1383 WP_326229049.1 ATP-dependent helicase ComFA Machinery gene
  ACK2WG_RS17990 (ACK2WG_17990) - 3510190..3511035 (-) 846 WP_014115354.1 DegV family protein -
  ACK2WG_RS17995 (ACK2WG_17995) degU 3511133..3511822 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACK2WG_RS18000 (ACK2WG_18000) degS 3511905..3513062 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27360.80 Da        Isoelectric Point: 9.6427

>NTDB_id=1080808 ACK2WG_RS17975 WP_061186927.1 3507649..3508371(-) (comFC) [Bacillus spizizenii strain 29-4]
MPNEAGGGIYKLICLLCDSPFFQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCRDCEAWKSRVSD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHFVLVPIPLSKEREKERGFNQAQLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1080808 ACK2WG_RS17975 WP_061186927.1 3507649..3508371(-) (comFC) [Bacillus spizizenii strain 29-4]
ATGCCAAATGAAGCAGGAGGGGGCATTTATAAACTGATCTGTCTATTATGCGATTCACCATTTTTTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGGCCTCAATCCGTTCATGCGGTATGCAGGGATTGCGAGGCGTGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTCTCACAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTGAGCAAGGAACGGGAAAAAGAGCGCGGATTTAACCAGGCACAGCTCCTGGCAGAATGTTTA
GACCGGCCTATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
AGCACGTATTTTTGATACAAAAAATAACTCAGCCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.833

100

0.908

Multiple sequence alignment