Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACK2WG_RS17995 Genome accession   NZ_CP176536
Coordinates   3511133..3511822 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus spizizenii strain 29-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3506133..3516822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS17960 (ACK2WG_17960) flgN 3506314..3506796 (-) 483 WP_014115348.1 flagellar protein FlgN -
  ACK2WG_RS17965 (ACK2WG_17965) flgM 3506811..3507077 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK2WG_RS17970 (ACK2WG_17970) - 3507157..3507576 (-) 420 WP_079288824.1 TIGR03826 family flagellar region protein -
  ACK2WG_RS17975 (ACK2WG_17975) comFC 3507649..3508371 (-) 723 WP_061186927.1 ComF family protein Machinery gene
  ACK2WG_RS17980 (ACK2WG_17980) - 3508335..3508631 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  ACK2WG_RS17985 (ACK2WG_17985) comFA 3508700..3510082 (-) 1383 WP_326229049.1 ATP-dependent helicase ComFA Machinery gene
  ACK2WG_RS17990 (ACK2WG_17990) - 3510190..3511035 (-) 846 WP_014115354.1 DegV family protein -
  ACK2WG_RS17995 (ACK2WG_17995) degU 3511133..3511822 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACK2WG_RS18000 (ACK2WG_18000) degS 3511905..3513062 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator
  ACK2WG_RS18005 (ACK2WG_18005) - 3513278..3513931 (+) 654 WP_061186930.1 YigZ family protein -
  ACK2WG_RS18010 (ACK2WG_18010) - 3513931..3515055 (+) 1125 WP_061186931.1 LCP family protein -
  ACK2WG_RS18015 (ACK2WG_18015) - 3515128..3516204 (-) 1077 WP_061186932.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1080810 ACK2WG_RS17995 WP_003219701.1 3511133..3511822(-) (degU) [Bacillus spizizenii strain 29-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1080810 ACK2WG_RS17995 WP_003219701.1 3511133..3511822(-) (degU) [Bacillus spizizenii strain 29-4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCCGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATCGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAATGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACCCGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment