Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACK2WG_RS12040 Genome accession   NZ_CP176536
Coordinates   2389082..2390812 (-) Length   576 a.a.
NCBI ID   WP_409508987.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2384082..2395812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS12015 (ACK2WG_12015) - 2384683..2384814 (+) 132 WP_409508985.1 hypothetical protein -
  ACK2WG_RS12020 (ACK2WG_12020) - 2384887..2386005 (+) 1119 WP_409508986.1 NADH-dependent flavin oxidoreductase -
  ACK2WG_RS12025 (ACK2WG_12025) - 2386222..2386401 (-) 180 WP_061186895.1 hypothetical protein -
  ACK2WG_RS12030 (ACK2WG_12030) spo0A 2386548..2387351 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACK2WG_RS12035 (ACK2WG_12035) spoIVB 2387628..2388908 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  ACK2WG_RS12040 (ACK2WG_12040) recN 2389082..2390812 (-) 1731 WP_409508987.1 DNA repair protein RecN Machinery gene
  ACK2WG_RS12045 (ACK2WG_12045) argR 2390848..2391297 (-) 450 WP_014114358.1 arginine repressor ArgR -
  ACK2WG_RS12050 (ACK2WG_12050) - 2391394..2392239 (-) 846 WP_072566534.1 TlyA family RNA methyltransferase -
  ACK2WG_RS12055 (ACK2WG_12055) dxs 2392236..2394137 (-) 1902 WP_061186892.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACK2WG_RS12060 (ACK2WG_12060) - 2394318..2395208 (-) 891 WP_409508988.1 polyprenyl synthetase family protein -
  ACK2WG_RS12065 (ACK2WG_12065) - 2395198..2395452 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64679.51 Da        Isoelectric Point: 4.7405

>NTDB_id=1080780 ACK2WG_RS12040 WP_409508987.1 2389082..2390812(-) (recN) [Bacillus spizizenii strain 29-4]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFDVC
IEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYHRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EEILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKI
RTASRNEEAPIVNGQPVQLTDQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1080780 ACK2WG_RS12040 WP_409508987.1 2389082..2390812(-) (recN) [Bacillus spizizenii strain 29-4]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGAGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGACGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAGACAAAAGCCGAGCTTGAAGGGCTGTTTCTATTGGAGAGCGGCCACCCCGTTTTTGACGTATGC
ATTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTTAATGGCAAGCTTGTCACGATTGCTTCGTTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTAGAAAGCGCGCTTCAA
GCATATCAGGAAGGGTACCATCGGTATATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTGGACCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTCGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATCTATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTCGAAGATATATCCGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTGTCGAACTCTTACTATCTGCTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGCCTGAATTATATTGAGACGCGTCTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGAGATTTTGGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTTGCGGTGGAAGCGGCAAATGTTTCACAAATCCGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGAGAATTAAAAAGCCTCTATATGGAAAAATCAACTTTTGATACGGAATTTAAGATC
AGAACAGCGTCTCGCAATGAGGAGGCGCCGATTGTAAACGGCCAGCCTGTTCAGCTGACTGACCAAGGAATTGATCTGGT
CAAGTTTTTAATTTCAACCAACACAGGCGAGCCTTTGAAATCCCTTTCGAAAGTCGCTTCCGGAGGGGAGCTGTCTCGGG
TGATGCTTGCCATCAAAAGCATTTTTTCCTCGCAACAGGATGTGACGTCGATTATATTCGATGAGGTAGATACCGGTGTA
AGCGGCAGAGTCGCGCAGGCAATCGCTGAGAAGATCCATAAAGTCTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTAGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACCACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCCGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTCTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.049

100

0.97

Multiple sequence alignment