Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACK2WG_RS12030 Genome accession   NZ_CP176536
Coordinates   2386548..2387351 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus spizizenii strain 29-4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2381548..2392351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2WG_RS12000 (ACK2WG_12000) - 2382612..2383343 (-) 732 WP_409508984.1 glycerophosphodiester phosphodiesterase -
  ACK2WG_RS12005 (ACK2WG_12005) - 2383423..2384043 (-) 621 WP_079287949.1 N-acetylmuramoyl-L-alanine amidase -
  ACK2WG_RS12010 (ACK2WG_12010) - 2384062..2384358 (-) 297 WP_014114342.1 hypothetical protein -
  ACK2WG_RS12015 (ACK2WG_12015) - 2384683..2384814 (+) 132 WP_409508985.1 hypothetical protein -
  ACK2WG_RS12020 (ACK2WG_12020) - 2384887..2386005 (+) 1119 WP_409508986.1 NADH-dependent flavin oxidoreductase -
  ACK2WG_RS12025 (ACK2WG_12025) - 2386222..2386401 (-) 180 WP_061186895.1 hypothetical protein -
  ACK2WG_RS12030 (ACK2WG_12030) spo0A 2386548..2387351 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACK2WG_RS12035 (ACK2WG_12035) spoIVB 2387628..2388908 (-) 1281 WP_014114356.1 SpoIVB peptidase -
  ACK2WG_RS12040 (ACK2WG_12040) recN 2389082..2390812 (-) 1731 WP_409508987.1 DNA repair protein RecN Machinery gene
  ACK2WG_RS12045 (ACK2WG_12045) argR 2390848..2391297 (-) 450 WP_014114358.1 arginine repressor ArgR -
  ACK2WG_RS12050 (ACK2WG_12050) - 2391394..2392239 (-) 846 WP_072566534.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1080779 ACK2WG_RS12030 WP_003226427.1 2386548..2387351(-) (spo0A) [Bacillus spizizenii strain 29-4]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1080779 ACK2WG_RS12030 WP_003226427.1 2386548..2387351(-) (spo0A) [Bacillus spizizenii strain 29-4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGATGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCTTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATCCGCCAAGTCAGCGGAAATGCCAGCAGCGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCACATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTTTACAATGACAT
TGAATTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCATGCGATCGAAGTGGCATGGAGCAGAGGTAACATTGATTCCATTTCCTCGTTGTTCGGCTATACAGTC
AGTATGACGAAAGCTAAGCCGACAAACTCAGAGTTCATTGCGATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment