Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACFGDV_RS15685 Genome accession   NZ_CP176528
Coordinates   3409681..3410478 (+) Length   265 a.a.
NCBI ID   WP_136417377.1    Uniprot ID   -
Organism   Noviherbaspirillum sp. ST 5-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404681..3415478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFGDV_RS15660 phaR 3404951..3405508 (-) 558 WP_136417372.1 polyhydroxyalkanoate synthesis repressor PhaR -
  ACFGDV_RS15665 phaC 3405791..3407506 (-) 1716 WP_136417373.1 class I poly(R)-hydroxyalkanoic acid synthase -
  ACFGDV_RS15670 - 3407559..3407804 (+) 246 WP_136417374.1 hypothetical protein -
  ACFGDV_RS15675 pgeF 3407837..3408586 (-) 750 WP_136417375.1 peptidoglycan editing factor PgeF -
  ACFGDV_RS15680 - 3408602..3409636 (-) 1035 WP_136417376.1 RluA family pseudouridine synthase -
  ACFGDV_RS15685 comL 3409681..3410478 (+) 798 WP_136417377.1 outer membrane protein assembly factor BamD Machinery gene
  ACFGDV_RS15690 yaaA 3410518..3411294 (-) 777 WP_136417378.1 peroxide stress protein YaaA -
  ACFGDV_RS15695 - 3411329..3411787 (+) 459 WP_136417379.1 putative toxin-antitoxin system toxin component, PIN family -
  ACFGDV_RS15700 - 3411821..3413008 (+) 1188 WP_136417380.1 pyridoxal phosphate-dependent aminotransferase -
  ACFGDV_RS15705 - 3413193..3414341 (+) 1149 WP_136417381.1 HD-GYP domain-containing protein -
  ACFGDV_RS15710 - 3414400..3415050 (-) 651 WP_136417382.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 30628.64 Da        Isoelectric Point: 7.3451

>NTDB_id=1080723 ACFGDV_RS15685 WP_136417377.1 3409681..3410478(+) (comL) [Noviherbaspirillum sp. ST 5-3]
MHKRSLKFAAIALALSLSGCGLFPEKIDETKDWSASKLYSEARDELSSGNFEKAVQYFEKLESRYPFGTYAQQAQMEVAY
AYYRQGDQAQALAAVERFIKLHPNHPNVDYMYYLRGLINFNDKVSFLDFLSKQDPSERDPKAARDAFDSFKQLAERFPDS
IYTKDALARMKYLVNAMAQYEVHVADYYYRRGAYLAAANRAQIAVNEYRDAPAIEEALFIMVRSYDALGLPELRDDAERV
MRKNFPNSVFFKGGPDRSGPWWKIW

Nucleotide


Download         Length: 798 bp        

>NTDB_id=1080723 ACFGDV_RS15685 WP_136417377.1 3409681..3410478(+) (comL) [Noviherbaspirillum sp. ST 5-3]
ATGCATAAAAGATCGTTGAAGTTCGCTGCCATTGCCCTTGCTTTGTCCCTGTCCGGATGCGGTCTGTTCCCGGAGAAGAT
CGACGAAACCAAGGATTGGTCAGCCTCCAAATTATACTCGGAGGCCCGCGACGAATTGTCGAGCGGTAATTTTGAAAAAG
CAGTCCAGTACTTTGAAAAGCTGGAATCGCGTTATCCGTTCGGGACGTACGCACAACAGGCACAGATGGAAGTCGCTTAC
GCCTATTATCGCCAGGGCGACCAGGCGCAAGCCCTGGCGGCCGTCGAGCGCTTCATCAAGCTGCATCCGAATCACCCGAA
CGTCGACTACATGTACTACCTGCGCGGGCTGATCAACTTCAATGACAAGGTCAGCTTTCTCGACTTTCTGTCGAAGCAGG
ATCCGAGCGAACGCGACCCGAAAGCCGCGCGCGACGCCTTCGACTCGTTCAAGCAGCTGGCCGAGCGTTTTCCTGACAGC
ATCTACACCAAGGATGCGCTCGCCCGCATGAAGTACCTGGTCAATGCGATGGCGCAGTATGAGGTGCACGTGGCCGATTA
CTACTATCGCCGCGGCGCTTACCTGGCGGCGGCGAATCGCGCACAGATCGCGGTGAATGAATACCGTGACGCACCGGCGA
TCGAGGAAGCCTTGTTCATCATGGTGCGTTCTTATGATGCGCTCGGCCTGCCGGAATTGCGCGATGACGCGGAGCGTGTG
ATGCGGAAGAATTTCCCGAACAGCGTCTTTTTCAAAGGCGGTCCCGATCGCAGCGGACCTTGGTGGAAGATCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(33-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.042

98.491

0.483
  comL Neisseria gonorrhoeae MS11

47.893

98.491

0.472

Multiple sequence alignment