Detailed information NTG1080714

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACFGDV_RS04685
• Genome accession: NZ_CP176528
• Coordinates: 969270..970715 (+)
• Length: 481 a.a.
• NCBI ID: WP_136413168.1
• Uniprot ID: -
• Organism: Noviherbaspirillum sp. ST 5-3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 964270..975715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFGDV_RS04665	-	964981..966324 (+)	1344	WP_282183672.1	sigma-54-dependent transcriptional regulator	-
ACFGDV_RS04670	-	966395..967204 (+)	810	WP_136413170.1	inner membrane protein YpjD	-
ACFGDV_RS04675	-	967201..967446 (+)	246	WP_136413169.1	PP0621 family protein	-
ACFGDV_RS04680	-	967549..969273 (+)	1725	WP_247869472.1	PAS domain-containing sensor histidine kinase	-
ACFGDV_RS04685	pilR	969270..970715 (+)	1446	WP_136413168.1	sigma-54-dependent transcriptional regulator	Regulator
ACFGDV_RS04690	ampD	970712..971308 (+)	597	WP_136413167.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACFGDV_RS04695	-	971669..974578 (+)	2910	WP_136413166.1	ribonucleoside-diphosphate reductase subunit alpha	-

Sequence

Protein

• Length: 481 a.a.
• Molecular weight: 52064.57 Da
• Isoelectric Point: 5.5198

>NTDB_id=1080714 ACFGDV_RS04685 WP_136413168.1 969270..970715(+) (pilR) [Noviherbaspirillum sp. ST 5-3]
MTAPRILVVDDEADLRELLEITLVKMGLDVDCAETLAAARALLAEHEYALVLTDMRLPDGLGIELVREVASTYKNTPIAV
ITAFGSADNAVAALKAGAFDYLSKPIGLDQLRLMVQSALRTQHAGSGSSPSSGQVEAATSRLTGDSAVMRDLRAQIVRLA
RSMAPVAITGESGSGKELAARDIHAHSARADKPFIAVNCGAIPEALMEAEFFGYRKGAFTGANDDRDGFFQAANGGTLML
DEVADLPLPMQVKLLRAIQERRVRKVGATVEEPVDVRLISATHQNLASCVERGTFRQDLFYRLNVIELRLPPLRERLEDI
SQMADALLERLSSCGSRAVLSPQALQALQSYPFPGNVRELENILERALAFANGGVIEVGDLALKPVSVSDLSNAQHVAKP
TEPPAAPAAGPERAVAASALPVEVELPCSLPEHLDHVEREIIRRALARTHFNRTQAAELLGISFRQLRYRMQRLSIHEPD
S

Nucleotide

• Length: 1446 bp

>NTDB_id=1080714 ACFGDV_RS04685 WP_136413168.1 969270..970715(+) (pilR) [Noviherbaspirillum sp. ST 5-3]
ATGACCGCACCCCGTATCCTGGTCGTTGACGATGAAGCCGACCTGCGCGAGCTGCTTGAGATCACGCTTGTCAAGATGGG
TCTGGATGTCGATTGCGCCGAAACGCTCGCGGCAGCACGCGCGCTCCTCGCAGAGCACGAGTATGCATTGGTGTTGACCG
ATATGCGCCTGCCGGACGGACTTGGCATTGAGTTGGTGCGCGAGGTGGCGAGTACCTACAAGAACACTCCGATCGCCGTG
ATTACCGCATTTGGCAGCGCCGACAATGCAGTCGCCGCGCTCAAGGCCGGAGCGTTCGACTACCTGTCCAAGCCGATCGG
CCTGGATCAGTTGCGCCTGATGGTGCAGTCGGCGCTGCGCACCCAACATGCCGGTAGCGGGTCGAGTCCGTCGTCTGGCC
AGGTGGAGGCGGCTACTTCGCGCCTGACCGGAGATTCGGCAGTCATGCGAGACTTGCGCGCGCAGATTGTCAGGCTGGCG
CGCAGCATGGCGCCGGTCGCGATCACAGGCGAGTCCGGCAGCGGCAAGGAGCTGGCCGCACGGGACATACACGCGCATAG
CGCGCGCGCTGACAAGCCGTTCATCGCGGTCAATTGCGGCGCCATTCCGGAAGCCTTGATGGAAGCCGAATTTTTCGGTT
ATCGCAAAGGCGCGTTCACCGGTGCCAATGATGATCGCGACGGCTTCTTCCAGGCAGCCAACGGCGGCACCCTGATGCTG
GACGAGGTCGCCGACTTGCCGTTGCCGATGCAGGTGAAGTTGCTGCGCGCAATCCAGGAGCGTCGCGTCCGCAAGGTCGG
CGCCACGGTGGAGGAGCCGGTCGATGTGCGTTTGATCAGCGCAACCCATCAGAACCTGGCCTCATGCGTGGAAAGGGGGA
CGTTCCGCCAGGATTTGTTTTATCGCCTGAATGTCATCGAATTGCGTTTGCCCCCGCTGCGCGAGCGCCTGGAAGATATC
AGCCAGATGGCCGACGCGCTGCTGGAGCGCTTGTCTTCTTGCGGCAGCAGGGCTGTGCTGTCGCCTCAGGCGCTGCAAGC
ACTGCAGTCCTATCCATTTCCCGGCAACGTGCGCGAGCTGGAAAATATTCTTGAGCGAGCGCTGGCGTTTGCCAACGGAG
GTGTCATCGAGGTAGGAGACCTTGCGCTGAAGCCGGTATCCGTGAGCGATCTGTCGAATGCGCAACACGTAGCCAAGCCG
ACAGAGCCGCCGGCGGCGCCTGCCGCCGGACCGGAACGTGCGGTTGCCGCAAGTGCGCTTCCTGTCGAAGTCGAGCTGCC
ATGTTCACTGCCAGAGCATCTCGATCATGTCGAGCGCGAGATCATTCGTCGGGCACTGGCAAGAACCCATTTCAACCGGA
CGCAGGCGGCTGAATTGCTCGGCATCAGCTTCCGCCAGCTGCGTTATCGCATGCAGCGACTATCCATTCACGAACCGGAT
TCATGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (435-474)

• Sigma-54 interaction domain (Sigma54_activat) (143-308)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.837	99.376	0.505
pilR	Acinetobacter baumannii strain A118	43.867	100	0.439