Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACKW6F_RS14875 Genome accession   NZ_CP176527
Coordinates   2898202..2898843 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain D-62     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2893202..2903843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKW6F_RS14840 (ACKW6F_14840) - 2894330..2894761 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  ACKW6F_RS14845 (ACKW6F_14845) - 2894761..2895102 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  ACKW6F_RS14850 (ACKW6F_14850) - 2895095..2896573 (+) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  ACKW6F_RS14855 (ACKW6F_14855) - 2896580..2897059 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  ACKW6F_RS14860 (ACKW6F_14860) - 2897059..2897340 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  ACKW6F_RS14865 (ACKW6F_14865) mnhG 2897324..2897698 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  ACKW6F_RS14870 (ACKW6F_14870) - 2897789..2898178 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  ACKW6F_RS14875 (ACKW6F_14875) comA 2898202..2898843 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  ACKW6F_RS14880 (ACKW6F_14880) comP 2898924..2901215 (-) 2292 WP_024425943.1 ATP-binding protein Regulator
  ACKW6F_RS14885 (ACKW6F_14885) comX 2901229..2901402 (-) 174 WP_024425944.1 competence pheromone ComX -
  ACKW6F_RS14890 (ACKW6F_14890) - 2901380..2902303 (-) 924 WP_024425945.1 polyprenyl synthetase family protein -
  ACKW6F_RS14895 (ACKW6F_14895) degQ 2902455..2902595 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ACKW6F_RS14900 (ACKW6F_14900) - 2903101..2903457 (+) 357 WP_024425946.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=1080694 ACKW6F_RS14875 WP_024423322.1 2898202..2898843(-) (comA) [Bacillus safensis strain D-62]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1080694 ACKW6F_RS14875 WP_024423322.1 2898202..2898843(-) (comA) [Bacillus safensis strain D-62]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment