Detailed information NTG1080640

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: ACJX3V_RS16875
• Genome accession: NZ_CP176523
• Coordinates: 3407872..3409035 (-)
• Length: 387 a.a.
• NCBI ID: WP_003151385.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MEPW12
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3402872..3414035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJX3V_RS16845	-	3403148..3403567 (-)	420	WP_003151392.1	TIGR03826 family flagellar region protein	-
ACJX3V_RS16850	comFC	3403641..3404330 (-)	690	WP_197080391.1	phosphoribosyltransferase family protein	Machinery gene
ACJX3V_RS16855	-	3404336..3404620 (-)	285	WP_003151389.1	late competence development ComFB family protein	-
ACJX3V_RS16860	comFA	3404678..3406063 (-)	1386	WP_046560106.1	DEAD/DEAH box helicase	Machinery gene
ACJX3V_RS16865	-	3406171..3407019 (-)	849	WP_044052857.1	DegV family protein	-
ACJX3V_RS16870	degU	3407117..3407795 (-)	679	Protein_3259	two-component system response regulator DegU	-
ACJX3V_RS16875	degS	3407872..3409035 (-)	1164	WP_003151385.1	two-component sensor histidine kinase DegS	Regulator
ACJX3V_RS16880	-	3409257..3409904 (+)	648	WP_003151384.1	YigZ family protein	-
ACJX3V_RS16885	-	3409909..3411123 (+)	1215	WP_003151383.1	LCP family protein	-
ACJX3V_RS16890	-	3411213..3412289 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
ACJX3V_RS16895	tuaH	3412422..3413618 (-)	1197	WP_079004918.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.82 Da
• Isoelectric Point: 7.1378

>NTDB_id=1080640 ACJX3V_RS16875 WP_003151385.1 3407872..3409035(-) (degS) [Bacillus amyloliquefaciens strain MEPW12]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=1080640 ACJX3V_RS16875 WP_003151385.1 3407872..3409035(-) (degS) [Bacillus amyloliquefaciens strain MEPW12]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGTTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTTGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948