Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACJX3V_RS16850 Genome accession   NZ_CP176523
Coordinates   3403641..3404330 (-) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3398641..3409330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS16815 fliW 3398732..3399163 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  ACJX3V_RS16820 - 3399193..3399762 (-) 570 WP_024085861.1 DUF6470 family protein -
  ACJX3V_RS16825 flgL 3399853..3400770 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACJX3V_RS16830 flgK 3400782..3402299 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  ACJX3V_RS16835 - 3402315..3402797 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACJX3V_RS16840 flgM 3402812..3403078 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJX3V_RS16845 - 3403148..3403567 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACJX3V_RS16850 comFC 3403641..3404330 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACJX3V_RS16855 - 3404336..3404620 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACJX3V_RS16860 comFA 3404678..3406063 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  ACJX3V_RS16865 - 3406171..3407019 (-) 849 WP_044052857.1 DegV family protein -
  ACJX3V_RS16870 degU 3407117..3407795 (-) 679 Protein_3259 two-component system response regulator DegU -
  ACJX3V_RS16875 degS 3407872..3409035 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=1080638 ACJX3V_RS16850 WP_197080391.1 3403641..3404330(-) (comFC) [Bacillus amyloliquefaciens strain MEPW12]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1080638 ACJX3V_RS16850 WP_197080391.1 3403641..3404330(-) (comFC) [Bacillus amyloliquefaciens strain MEPW12]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment