Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACJX3V_RS16860 Genome accession   NZ_CP176523
Coordinates   3404678..3406063 (-) Length   461 a.a.
NCBI ID   WP_046560106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MEPW12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3399678..3411063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX3V_RS16825 flgL 3399853..3400770 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACJX3V_RS16830 flgK 3400782..3402299 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  ACJX3V_RS16835 - 3402315..3402797 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACJX3V_RS16840 flgM 3402812..3403078 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJX3V_RS16845 - 3403148..3403567 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACJX3V_RS16850 comFC 3403641..3404330 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  ACJX3V_RS16855 - 3404336..3404620 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACJX3V_RS16860 comFA 3404678..3406063 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  ACJX3V_RS16865 - 3406171..3407019 (-) 849 WP_044052857.1 DegV family protein -
  ACJX3V_RS16870 degU 3407117..3407795 (-) 679 Protein_3259 two-component system response regulator DegU -
  ACJX3V_RS16875 degS 3407872..3409035 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACJX3V_RS16880 - 3409257..3409904 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52557.10 Da        Isoelectric Point: 10.1601

>NTDB_id=1080639 ACJX3V_RS16860 WP_046560106.1 3404678..3406063(-) (comFA) [Bacillus amyloliquefaciens strain MEPW12]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNCYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1080639 ACJX3V_RS16860 WP_046560106.1 3404678..3406063(-) (comFA) [Bacillus amyloliquefaciens strain MEPW12]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACTGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment