Detailed information NTG1080479

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACJ7VY_RS12345
• Genome accession: NZ_CP176501
• Coordinates: 2716875..2718242 (+)
• Length: 455 a.a.
• NCBI ID: WP_313253867.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. Y-13
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2711875..2723242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJ7VY_RS12325 (ACJ7VY_12325)	-	2711950..2712633 (+)	684	WP_409475718.1	DUF3108 domain-containing protein	-
ACJ7VY_RS12330 (ACJ7VY_12330)	sucD	2712709..2713584 (-)	876	WP_054667217.1	succinate--CoA ligase subunit alpha	-
ACJ7VY_RS12335 (ACJ7VY_12335)	sucC	2713766..2714938 (-)	1173	WP_054667218.1	ADP-forming succinate--CoA ligase subunit beta	-
ACJ7VY_RS12340 (ACJ7VY_12340)	-	2715198..2716811 (+)	1614	WP_313253864.1	HAMP domain-containing sensor histidine kinase	-
ACJ7VY_RS12345 (ACJ7VY_12345)	pilR	2716875..2718242 (+)	1368	WP_313253867.1	sigma-54 dependent transcriptional regulator	Regulator
ACJ7VY_RS12350 (ACJ7VY_12350)	-	2718438..2720360 (-)	1923	WP_409475719.1	ATP-binding protein	-
ACJ7VY_RS12355 (ACJ7VY_12355)	-	2720364..2722598 (-)	2235	WP_409475720.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 48957.15 Da
• Isoelectric Point: 6.2551

>NTDB_id=1080479 ACJ7VY_RS12345 WP_313253867.1 2716875..2718242(+) (pilR) [Stenotrophomonas sp. Y-13]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGMVKHALELNNSERAAPSPPPESASRLLGESQAMADLRTTIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGSATEVPVDVRILSATHKDLAALVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQLPTPLLSPSALDALAGYAFPGNVRELENVLERALALADGDSIGASDLRLPAARGDAGCAAEDAAVE
LDAGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=1080479 ACJ7VY_RS12345 WP_313253867.1 2716875..2718242(+) (pilR) [Stenotrophomonas sp. Y-13]
ATGAACGTGACGCATAGCGCGCTGGTCGTCGACGACGAACGGGACATCCGCGAACTCCTAGTCCTCACCCTCGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCCCGCGAACTGCTCGCCAGCAACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCGCGCGACCACCCGCGCACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAACTCAACAACAGCGAGCGGGCGGCGCCGTCGCCGCCAC
CGGAAAGCGCCTCGCGCCTGCTCGGCGAGTCGCAGGCGATGGCCGACCTGCGCACCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTGGCGCGCACCATCCACGACCAGGGCGCGCG
CGCGGCCGGGCCGTTCATACCGGTCAACTGCGGCGCCATCCCCGGCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCACGCGGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGGGGCACCCTGTTCCTGGACGAA
GTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCTCGGC
CACCGAAGTACCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCGGCGCTGGTGCAGGACGGCCGTTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGGCGACCTGCCGCAG
CTGGCGGCGGCCATCCTCAGCCGGCTGGCGCGCTCGCAGCAGCTGCCCACGCCACTGTTGTCGCCGTCGGCGCTGGACGC
GCTGGCCGGTTACGCCTTCCCCGGCAACGTACGCGAGCTGGAGAACGTGCTGGAGCGCGCGCTTGCCCTGGCCGATGGCG
ACAGCATCGGCGCCAGCGACCTGCGCCTGCCCGCCGCGCGCGGCGATGCCGGCTGCGCGGCCGAAGACGCCGCGGTCGAG
CTCGATGCCGGCAATGCAGCCCTTCCCTCGTACATCGAACAGATGGAGCGCGCGGCCATCCAGAAGGCGCTGGAAGAAAA
CCGCTGGAACCGGACCCGTACCGCGGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTCAAAAAGCTGGGCA
TGGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.745	99.121	0.642
pilR	Acinetobacter baumannii strain A118	48.261	100	0.488
luxO	Vibrio cholerae strain A1552	36.689	98.242	0.36