Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACJ3Y0_RS11410 | Genome accession | NZ_CP176471 |
| Coordinates | 2464473..2465342 (-) | Length | 289 a.a. |
| NCBI ID | WP_327783519.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2459473..2470342
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ3Y0_RS11375 (ACJ3Y0_11375) | rimM | 2459540..2460094 (+) | 555 | WP_017063236.1 | ribosome maturation factor RimM | - |
| ACJ3Y0_RS11380 (ACJ3Y0_11380) | trmD | 2460121..2460861 (+) | 741 | WP_019826347.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACJ3Y0_RS11385 (ACJ3Y0_11385) | rplS | 2460921..2461274 (+) | 354 | WP_004735514.1 | 50S ribosomal protein L19 | - |
| ACJ3Y0_RS11390 (ACJ3Y0_11390) | - | 2461582..2462753 (+) | 1172 | WP_210446792.1 | IS3 family transposase | - |
| ACJ3Y0_RS11395 (ACJ3Y0_11395) | yacG | 2462811..2463008 (-) | 198 | WP_327783518.1 | DNA gyrase inhibitor YacG | - |
| ACJ3Y0_RS11400 (ACJ3Y0_11400) | zapD | 2463089..2463829 (-) | 741 | WP_086711973.1 | cell division protein ZapD | - |
| ACJ3Y0_RS11405 (ACJ3Y0_11405) | coaE | 2463856..2464470 (-) | 615 | WP_372383836.1 | dephospho-CoA kinase | - |
| ACJ3Y0_RS11410 (ACJ3Y0_11410) | pilD | 2464473..2465342 (-) | 870 | WP_327783519.1 | A24 family peptidase | Machinery gene |
| ACJ3Y0_RS11415 (ACJ3Y0_11415) | pilC | 2465408..2466637 (-) | 1230 | WP_285954234.1 | type II secretion system F family protein | Machinery gene |
| ACJ3Y0_RS11420 (ACJ3Y0_11420) | pilB | 2466653..2468338 (-) | 1686 | WP_372383837.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACJ3Y0_RS11425 (ACJ3Y0_11425) | - | 2468338..2468802 (-) | 465 | WP_372383838.1 | pilin | - |
| ACJ3Y0_RS11430 (ACJ3Y0_11430) | nadC | 2469055..2469945 (-) | 891 | WP_285954237.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32692.96 Da Isoelectric Point: 7.6335
>NTDB_id=1080258 ACJ3Y0_RS11410 WP_327783519.1 2464473..2465342(-) (pilD) [Vibrio sp. BS-M-Sm-2]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPINARYPLVELLTAILCTMVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWYGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPINARYPLVELLTAILCTMVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWYGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
Nucleotide
Download Length: 870 bp
>NTDB_id=1080258 ACJ3Y0_RS11410 WP_327783519.1 2464473..2465342(-) (pilD) [Vibrio sp. BS-M-Sm-2]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATTATGATGGAACGCGAATGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCAACCTGCCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTGTTAAGCTGGTTGTTCTTAAAAGGTAAGTGTCACAGCTGTGCCAATCCAATCAACGCTCGCTACCC
TTTGGTCGAACTGCTTACCGCAATACTTTGTACAATGGTTGCTAGCCACTTTGGTTTCAGTTACTACGCTATTGCTTTGA
TTTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACTATGCTGTTGCCTGATCAAATTACCTTACCT
TTAGTTTGGTACGGTATCGCGTTAGCTCTGTTTAATATCAGCCCTGTATCGCTTCAAGATTCCGTGGTTGGTGCAATGGC
AGGTTACCTAGCACTTTGGTCGGTTTATTGGCTGTTCAAGCTGTTAACAGGCAAAGAAGGCATGGGTTACGGTGATTTCA
AGTTATTAGCTGCGCTTGGCGCTTGGCTTGGTTGGCAACACCTCCCAATGATCATTCTTCTATCCTCACTTGTCGGCTTA
GTTTTCGGATTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTTCCATTTGGACCTTACCTTGCGATTGC
GGGTTGGGTGAGTTTGATGTGGGGCAACGACATCATGGGCTGGTATTTCACTTCTGTACTAGGAATTTAA
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATTATGATGGAACGCGAATGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCAACCTGCCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATTCCAGTGTTAAGCTGGTTGTTCTTAAAAGGTAAGTGTCACAGCTGTGCCAATCCAATCAACGCTCGCTACCC
TTTGGTCGAACTGCTTACCGCAATACTTTGTACAATGGTTGCTAGCCACTTTGGTTTCAGTTACTACGCTATTGCTTTGA
TTTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACTATGCTGTTGCCTGATCAAATTACCTTACCT
TTAGTTTGGTACGGTATCGCGTTAGCTCTGTTTAATATCAGCCCTGTATCGCTTCAAGATTCCGTGGTTGGTGCAATGGC
AGGTTACCTAGCACTTTGGTCGGTTTATTGGCTGTTCAAGCTGTTAACAGGCAAAGAAGGCATGGGTTACGGTGATTTCA
AGTTATTAGCTGCGCTTGGCGCTTGGCTTGGTTGGCAACACCTCCCAATGATCATTCTTCTATCCTCACTTGTCGGCTTA
GTTTTCGGATTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTTCCATTTGGACCTTACCTTGCGATTGC
GGGTTGGGTGAGTTTGATGTGGGGCAACGACATCATGGGCTGGTATTTCACTTCTGTACTAGGAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
74.74 |
100 |
0.747 |
| pilD | Vibrio cholerae strain A1552 |
68.056 |
99.654 |
0.678 |
| pilD | Acinetobacter nosocomialis M2 |
50.562 |
92.388 |
0.467 |
| pilD | Acinetobacter baumannii D1279779 |
50.187 |
92.388 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
48.263 |
89.619 |
0.433 |