Detailed information NTG1080107

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJPHY_RS22045
• Genome accession: NZ_CP176424
• Coordinates: 4742312..4743184 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain IGLPR01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4737312..4748184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJPHY_RS22030	-	4738695..4739159 (-)	465	WP_003111216.1	pilin	-
ACJPHY_RS22035	pilB	4739390..4741090 (+)	1701	WP_034083986.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACJPHY_RS22040	pilC	4741094..4742311 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
ACJPHY_RS22045	pilD	4742312..4743184 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ACJPHY_RS22050	coaE	4743181..4743792 (+)	612	WP_074222680.1	dephospho-CoA kinase	-
ACJPHY_RS22055	yacG	4743789..4743989 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ACJPHY_RS22060	-	4744026..4744235 (-)	210	WP_058355292.1	hypothetical protein	-
ACJPHY_RS22065	-	4744341..4745030 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
ACJPHY_RS22070	-	4745027..4745497 (-)	471	WP_003094664.1	hypothetical protein	-
ACJPHY_RS22075	-	4745494..4745919 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
ACJPHY_RS22080	-	4746052..4746681 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
ACJPHY_RS22085	-	4746678..4747127 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
ACJPHY_RS22090	-	4747153..4747323 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=1080107 ACJPHY_RS22045 WP_023084740.1 4742312..4743184(+) (pilD) [Pseudomonas aeruginosa strain IGLPR01]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1080107 ACJPHY_RS22045 WP_023084740.1 4742312..4743184(+) (pilD) [Pseudomonas aeruginosa strain IGLPR01]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472