Detailed information    

insolico Bioinformatically predicted

Overview


Name   oppA   Type   Regulator
Locus tag   ACKWPP_RS09135 Genome accession   NZ_CP176418
Coordinates   1802165..1803013 (-) Length   282 a.a.
NCBI ID   WP_409374402.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1797165..1808013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS09110 (ACKWPP_09110) - 1797239..1797661 (+) 423 WP_409373851.1 hypothetical protein -
  ACKWPP_RS09115 (ACKWPP_09115) - 1797651..1799450 (+) 1800 WP_409373852.1 acyltransferase family protein -
  ACKWPP_RS09120 (ACKWPP_09120) - 1799674..1800327 (-) 654 WP_409373853.1 phosphatase PAP2 family protein -
  ACKWPP_RS09125 (ACKWPP_09125) - 1800352..1800909 (-) 558 WP_009910581.1 ECF transporter S component -
  ACKWPP_RS09130 (ACKWPP_09130) - 1801233..1801778 (-) 546 WP_024381673.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  ACKWPP_RS09135 (ACKWPP_09135) oppA 1802165..1803013 (-) 849 WP_409374402.1 ABC transporter substrate-binding protein Regulator
  ACKWPP_RS09140 (ACKWPP_09140) - 1803071..1803409 (+) 339 WP_409373670.1 IS630 transposase-related protein -
  ACKWPP_RS09145 (ACKWPP_09145) - 1803441..1803917 (+) 477 Protein_1763 transposase -
  ACKWPP_RS09150 (ACKWPP_09150) oppA 1803910..1804833 (-) 924 WP_409373854.1 ABC transporter substrate-binding protein Regulator
  ACKWPP_RS09155 (ACKWPP_09155) yidD 1805253..1805492 (-) 240 WP_014736240.1 membrane protein insertion efficiency factor YidD -
  ACKWPP_RS09160 (ACKWPP_09160) - 1805492..1806223 (-) 732 WP_024413987.1 pseudouridine synthase -
  ACKWPP_RS09165 (ACKWPP_09165) scpB 1806213..1806782 (-) 570 WP_409373855.1 SMC-Scp complex subunit ScpB -
  ACKWPP_RS09170 (ACKWPP_09170) - 1806766..1807485 (-) 720 WP_208498103.1 segregation/condensation protein A -

Sequence


Protein


Download         Length: 282 a.a.        Molecular weight: 31709.05 Da        Isoelectric Point: 4.2061

>NTDB_id=1080078 ACKWPP_RS09135 WP_409374402.1 1802165..1803013(-) (oppA) [Streptococcus suis strain KKAHC02]
MDGIYNYIGFNLGKYDDASGKNVTNPNVKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYS
YDPEKAKKLLDEAGYKDVDGDGMREDADGKSLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESI
AANDEGIDVYLAAWIAGLDPDPTSLWGPEAMYNYTRFVSDDNTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPT
FERESITAVNKRVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 849 bp        

>NTDB_id=1080078 ACKWPP_RS09135 WP_409374402.1 1802165..1803013(-) (oppA) [Streptococcus suis strain KKAHC02]
CTGGATGGTATTTACAATTATATTGGCTTTAATCTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCAATCCTAA
TGTTAAGATGAATAATGTTAAATTGCGTCAAGCAATGGGATATGCATTGGACAATGCGGTGATTGGAGAGAAATTATATA
ACGGCTTGTATCACCCGACAAACTCACTAATTATCTCTTTCTTTGGAGATGTTCATGATTCAGAATTAGCTGGCTATAGT
TATGATCCTGAAAAGGCTAAAAAACTTCTCGATGAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGC
TGATGGAAAATCGCTTACCATCAGTGTTGCAGCACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTA
CATGGTGGAAAGAAATTGGTTTGAATGTGGAACTCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATT
GCTGCCAATGATGAGGGGATTGATGTCTATCTTGCAGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGG
ACCTGAAGCGATGTACAACTATACTCGCTTCGTTTCAGATGATAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGT
CATTTGACGAACAAAAAAATATTGAAAACTACAAAGCTTGGCAAGAATATGCATTCGAGCAAGCCTTTGCAATTCCAACC
TTTGAACGTGAAAGTATTACTGCCGTTAACAAACGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGG
CCATGAAAATCTTGAGTTGACTGCGGAAAAAGGGATTGCAGCAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

66.197

100

0.667


Multiple sequence alignment