Detailed information    

insolico Bioinformatically predicted

Overview


Name   oppA   Type   Regulator
Locus tag   ACKWPP_RS09150 Genome accession   NZ_CP176418
Coordinates   1803910..1804833 (-) Length   307 a.a.
NCBI ID   WP_409373854.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1798910..1809833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS09120 (ACKWPP_09120) - 1799674..1800327 (-) 654 WP_409373853.1 phosphatase PAP2 family protein -
  ACKWPP_RS09125 (ACKWPP_09125) - 1800352..1800909 (-) 558 WP_009910581.1 ECF transporter S component -
  ACKWPP_RS09130 (ACKWPP_09130) - 1801233..1801778 (-) 546 WP_024381673.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  ACKWPP_RS09135 (ACKWPP_09135) oppA 1802165..1803013 (-) 849 WP_409374402.1 ABC transporter substrate-binding protein Regulator
  ACKWPP_RS09140 (ACKWPP_09140) - 1803071..1803409 (+) 339 WP_409373670.1 IS630 transposase-related protein -
  ACKWPP_RS09145 (ACKWPP_09145) - 1803441..1803917 (+) 477 Protein_1763 transposase -
  ACKWPP_RS09150 (ACKWPP_09150) oppA 1803910..1804833 (-) 924 WP_409373854.1 ABC transporter substrate-binding protein Regulator
  ACKWPP_RS09155 (ACKWPP_09155) yidD 1805253..1805492 (-) 240 WP_014736240.1 membrane protein insertion efficiency factor YidD -
  ACKWPP_RS09160 (ACKWPP_09160) - 1805492..1806223 (-) 732 WP_024413987.1 pseudouridine synthase -
  ACKWPP_RS09165 (ACKWPP_09165) scpB 1806213..1806782 (-) 570 WP_409373855.1 SMC-Scp complex subunit ScpB -
  ACKWPP_RS09170 (ACKWPP_09170) - 1806766..1807485 (-) 720 WP_208498103.1 segregation/condensation protein A -
  ACKWPP_RS09175 (ACKWPP_09175) xerD 1807485..1808216 (-) 732 WP_409373856.1 site-specific tyrosine recombinase XerD -
  ACKWPP_RS09180 (ACKWPP_09180) cbpB 1808213..1808671 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  ACKWPP_RS09185 (ACKWPP_09185) - 1808668..1809195 (-) 528 WP_409373857.1 metallophosphoesterase -

Sequence


Protein


Download         Length: 307 a.a.        Molecular weight: 33591.03 Da        Isoelectric Point: 4.3476

>NTDB_id=1080079 ACKWPP_RS09150 WP_409373854.1 1803910..1804833(-) (oppA) [Streptococcus suis strain KKAHC02]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGEAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDCTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNIIVI

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1080079 ACKWPP_RS09150 WP_409373854.1 1803910..1804833(-) (oppA) [Streptococcus suis strain KKAHC02]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTGACAGCTTGCCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGAAAGGACTATAAGTGGTCTGATGGGGAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAGGTTGATGACTGTACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCTAATATTATAGTCATTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

64.286

100

0.645


Multiple sequence alignment