Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ACKWPP_RS08420 Genome accession   NZ_CP176418
Coordinates   1662056..1663060 (-) Length   334 a.a.
NCBI ID   WP_004298830.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657056..1668060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS08410 (ACKWPP_08410) - 1658981..1660342 (-) 1362 WP_409373800.1 ATP-binding protein -
  ACKWPP_RS08415 (ACKWPP_08415) - 1660343..1660993 (-) 651 WP_409373801.1 response regulator transcription factor -
  ACKWPP_RS08420 (ACKWPP_08420) ccpA 1662056..1663060 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  ACKWPP_RS08425 (ACKWPP_08425) - 1663270..1664355 (+) 1086 WP_024386946.1 Xaa-Pro peptidase family protein -
  ACKWPP_RS08430 (ACKWPP_08430) tgt 1664394..1665536 (-) 1143 WP_409373802.1 tRNA guanosine(34) transglycosylase Tgt -
  ACKWPP_RS08435 (ACKWPP_08435) - 1665856..1666674 (+) 819 WP_409373803.1 DUF975 family protein -
  ACKWPP_RS08440 (ACKWPP_08440) - 1666994..1667431 (-) 438 WP_002935805.1 CoA-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36786.97 Da        Isoelectric Point: 5.5173

>NTDB_id=1080074 ACKWPP_RS08420 WP_004298830.1 1662056..1663060(-) (ccpA) [Streptococcus suis strain KKAHC02]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1080074 ACKWPP_RS08420 WP_004298830.1 1662056..1663060(-) (ccpA) [Streptococcus suis strain KKAHC02]
ATGTTAAACACTGATGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGATCGCTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGATTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTGAATACCCTGTTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCATCAATTACCT
AGCGTCAATATTGACTACGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCTAAGTATAAATACGAGGAAGGTTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAATGGTGTCAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATACGATATTGGTGCAATTGCTATGCGCATGCTCACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCATGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584

Multiple sequence alignment