Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACKGJP_RS36855 Genome accession   NZ_CP176395
Coordinates   8724786..8725271 (-) Length   161 a.a.
NCBI ID   WP_409343658.1    Uniprot ID   -
Organism   Paenibacillus sp. MBLB4367     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8719786..8730271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKGJP_RS36835 (ACKGJP_36835) rplI 8720863..8721309 (-) 447 WP_409343655.1 50S ribosomal protein L9 -
  ACKGJP_RS36840 (ACKGJP_36840) - 8721306..8723267 (-) 1962 WP_409343656.1 DHH family phosphoesterase -
  ACKGJP_RS36845 (ACKGJP_36845) - 8723292..8724230 (-) 939 WP_409343657.1 DUF2232 domain-containing protein -
  ACKGJP_RS36850 (ACKGJP_36850) rpsR 8724486..8724764 (-) 279 WP_113032849.1 30S ribosomal protein S18 -
  ACKGJP_RS36855 (ACKGJP_36855) ssbA 8724786..8725271 (-) 486 WP_409343658.1 single-stranded DNA-binding protein Machinery gene
  ACKGJP_RS36860 (ACKGJP_36860) rpsF 8725314..8725598 (-) 285 WP_409343659.1 30S ribosomal protein S6 -
  ACKGJP_RS36865 (ACKGJP_36865) - 8725835..8726023 (+) 189 WP_409343660.1 YjzC family protein -
  ACKGJP_RS36870 (ACKGJP_36870) - 8726042..8726293 (+) 252 WP_409343661.1 hypothetical protein -
  ACKGJP_RS36880 (ACKGJP_36880) - 8727647..8727877 (-) 231 WP_409343662.1 DUF951 domain-containing protein -
  ACKGJP_RS36885 (ACKGJP_36885) - 8727882..8728796 (-) 915 WP_409343663.1 mechanosensitive ion channel family protein -
  ACKGJP_RS36890 (ACKGJP_36890) - 8728845..8729096 (-) 252 WP_409343664.1 DUF3343 domain-containing protein -
  ACKGJP_RS36895 (ACKGJP_36895) yyaC 8729284..8729910 (+) 627 WP_409343665.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17938.91 Da        Isoelectric Point: 5.2939

>NTDB_id=1079905 ACKGJP_RS36855 WP_409343658.1 8724786..8725271(-) (ssbA) [Paenibacillus sp. MBLB4367]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFSNQQKEREADFIPVVVWRQQAEHCANYLRKGRLAAVEGRMQVR
NYDNNEGRKVYVTEVVADNVRFLESANSQGQGGGGGMARDEFAPPAPGQNQNRSFGGARNNQDPFSDDGKPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1079905 ACKGJP_RS36855 WP_409343658.1 8724786..8725271(-) (ssbA) [Paenibacillus sp. MBLB4367]
TTGTTGAACCGTGTTATTCTGATCGGCAGACTGACGCGTGATCCGGAGCTGCGGTACACACCGGCCGGTGTGGCGGTAAC
TCAATTTACGTTAGCAGTTGACAGGCCGTTCTCGAACCAGCAGAAGGAGCGCGAAGCGGATTTTATTCCTGTCGTCGTTT
GGCGGCAGCAGGCGGAGCACTGCGCAAACTATTTGCGTAAGGGACGTCTTGCAGCAGTGGAAGGCCGTATGCAAGTGCGC
AACTATGACAACAACGAAGGACGCAAGGTATATGTGACGGAAGTCGTTGCCGACAACGTTCGTTTCTTGGAATCGGCTAA
CAGCCAAGGCCAAGGCGGCGGAGGCGGTATGGCGCGGGATGAATTTGCGCCGCCGGCACCGGGTCAGAACCAGAACCGTT
CCTTCGGGGGAGCACGCAACAATCAAGATCCTTTTTCTGACGATGGAAAACCGATCGATATTTCTGACGATGATTTGCCA
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.621
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.522
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.769

64.596

0.36

Multiple sequence alignment