Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACKKE8_RS16525 Genome accession   NZ_CP176370
Coordinates   3325719..3326432 (+) Length   237 a.a.
NCBI ID   WP_409174040.1    Uniprot ID   -
Organism   Brevibacillus fortis strain LJQJ21     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3320719..3331432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKKE8_RS16505 (ACKKE8_16505) - 3322357..3322899 (+) 543 WP_409174036.1 hypothetical protein -
  ACKKE8_RS16510 (ACKKE8_16510) - 3323162..3323893 (-) 732 WP_409174037.1 ABC transporter permease -
  ACKKE8_RS16515 (ACKKE8_16515) - 3323906..3324655 (-) 750 WP_409174038.1 ABC transporter permease -
  ACKKE8_RS16520 (ACKKE8_16520) - 3324655..3325566 (-) 912 WP_409174039.1 ABC transporter ATP-binding protein -
  ACKKE8_RS16525 (ACKKE8_16525) scnR 3325719..3326432 (+) 714 WP_409174040.1 response regulator transcription factor Regulator
  ACKKE8_RS16530 (ACKKE8_16530) - 3326433..3327818 (+) 1386 WP_409174041.1 sensor histidine kinase -
  ACKKE8_RS16535 (ACKKE8_16535) - 3327918..3328949 (-) 1032 WP_409174042.1 ABC transporter substrate-binding protein -
  ACKKE8_RS16540 (ACKKE8_16540) - 3328946..3329704 (-) 759 WP_409179143.1 ABC transporter permease -
  ACKKE8_RS16545 (ACKKE8_16545) - 3329704..3330486 (-) 783 WP_409174043.1 ABC transporter ATP-binding protein -
  ACKKE8_RS16550 (ACKKE8_16550) tenA 3330471..3331151 (-) 681 WP_106655437.1 thiaminase II -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27139.53 Da        Isoelectric Point: 5.6813

>NTDB_id=1079804 ACKKE8_RS16525 WP_409174040.1 3325719..3326432(+) (scnR) [Brevibacillus fortis strain LJQJ21]
MEEWKQKKVLIVEDELEIRNMIDGFLRKEGFSRIFHAGSCKEALVICASDKPDVAILDVMLPDGDGFGLLTSIRRFSHIP
VIFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLLVILRRVYAPPQIDRLPVFQLGDSTIDLEAAIVTRDHHEYAL
TAKEHALLRKLYENRGRIVTSDALCQSVWGDDYYGYENTLMVHMRRIREKIEPCPSTPEYLLTVRGLGYKLLVKEEL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1079804 ACKKE8_RS16525 WP_409174040.1 3325719..3326432(+) (scnR) [Brevibacillus fortis strain LJQJ21]
ATGGAAGAGTGGAAACAGAAAAAAGTGCTCATCGTGGAAGATGAGCTTGAAATCAGAAATATGATCGATGGATTTTTGCG
TAAGGAAGGATTCTCTCGTATTTTTCATGCGGGTAGTTGTAAAGAGGCGTTAGTGATATGCGCTTCGGACAAGCCTGATG
TCGCGATCCTGGATGTCATGCTGCCTGATGGAGATGGATTTGGACTTTTGACTTCGATCCGTCGTTTCTCGCATATCCCT
GTCATTTTTCTGTCAGCGAGAGGGGAAGATGAAGATCGATTGCTCGGACTTGGCCTAGGGGCTGACGACTATATTGTGAA
GCCATTTTTACCGCGCGAGCTCGTTCTTCGTCTTCTGGTCATTTTACGACGCGTTTACGCTCCTCCCCAAATCGATCGTC
TGCCCGTTTTCCAGCTAGGTGACAGTACGATCGATTTGGAGGCGGCAATCGTGACGAGAGATCACCATGAATACGCTTTG
ACCGCCAAGGAACACGCACTCTTGCGAAAACTGTATGAAAATCGGGGACGAATCGTCACGAGTGATGCGCTGTGCCAATC
CGTCTGGGGTGATGATTATTACGGGTATGAAAACACGCTGATGGTTCATATGCGGCGCATTCGCGAAAAGATCGAGCCAT
GTCCGTCCACCCCTGAATATTTGCTGACAGTAAGAGGACTCGGGTACAAATTACTCGTAAAGGAAGAGTTGTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.87

97.046

0.494
  micA Streptococcus pneumoniae Cp1015

42.105

96.203

0.405
  vicR Streptococcus mutans UA159

41.921

96.624

0.405

Multiple sequence alignment