Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACKUBV_RS13040 Genome accession   NZ_CP176357
Coordinates   2754959..2755591 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio parahaemolyticus strain AG1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2749959..2760591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUBV_RS13025 (ACKUBV_13025) astA 2751263..2752282 (+) 1020 WP_005458129.1 arginine N-succinyltransferase -
  ACKUBV_RS13030 (ACKUBV_13030) astD 2752311..2753768 (+) 1458 WP_005480036.1 succinylglutamate-semialdehyde dehydrogenase -
  ACKUBV_RS13035 (ACKUBV_13035) - 2754011..2754802 (+) 792 WP_042764735.1 DUF1338 domain-containing protein -
  ACKUBV_RS13040 (ACKUBV_13040) crp 2754959..2755591 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACKUBV_RS13045 (ACKUBV_13045) - 2755832..2756701 (-) 870 WP_005458134.1 phosphoribulokinase -
  ACKUBV_RS13050 (ACKUBV_13050) - 2756827..2757039 (-) 213 WP_005458136.1 YheU family protein -
  ACKUBV_RS13055 (ACKUBV_13055) - 2757073..2758080 (-) 1008 WP_046268412.1 hydrolase -
  ACKUBV_RS13060 (ACKUBV_13060) - 2758167..2758655 (-) 489 WP_005458139.1 TIGR02444 family protein -
  ACKUBV_RS13065 (ACKUBV_13065) - 2758652..2760571 (-) 1920 WP_021449774.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=1079716 ACKUBV_RS13040 WP_005381432.1 2754959..2755591(-) (crp) [Vibrio parahaemolyticus strain AG1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1079716 ACKUBV_RS13040 WP_005381432.1 2754959..2755591(-) (crp) [Vibrio parahaemolyticus strain AG1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCAGGTGAAAAAGCTGAAACGTTGTACTACATCGTTAAAGGCTCTGTTGCGGTTCTTATCAAGG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCTAAACAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCGCACGGTAAAACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment