Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACKPXQ_RS16890 Genome accession   NZ_CP176038
Coordinates   3457917..3459080 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain A4     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3452917..3464080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS16860 (ACKPXQ_16860) - 3453182..3453601 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACKPXQ_RS16865 (ACKPXQ_16865) comFC 3453675..3454364 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  ACKPXQ_RS16870 (ACKPXQ_16870) - 3454370..3454654 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACKPXQ_RS16875 (ACKPXQ_16875) comFA 3454712..3456097 (-) 1386 WP_095060187.1 DEAD/DEAH box helicase Machinery gene
  ACKPXQ_RS16880 (ACKPXQ_16880) - 3456205..3457053 (-) 849 WP_003151387.1 DegV family protein -
  ACKPXQ_RS16885 (ACKPXQ_16885) degU 3457151..3457840 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKPXQ_RS16890 (ACKPXQ_16890) degS 3457917..3459080 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACKPXQ_RS16895 (ACKPXQ_16895) - 3459303..3459950 (+) 648 WP_007407485.1 YigZ family protein -
  ACKPXQ_RS16900 (ACKPXQ_16900) - 3459955..3461169 (+) 1215 WP_014419013.1 LCP family protein -
  ACKPXQ_RS16905 (ACKPXQ_16905) - 3461259..3462335 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ACKPXQ_RS16910 (ACKPXQ_16910) tuaH 3462468..3463664 (-) 1197 WP_182072047.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=1079544 ACKPXQ_RS16890 WP_007407484.1 3457917..3459080(-) (degS) [Bacillus velezensis strain A4]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1079544 ACKPXQ_RS16890 WP_007407484.1 3457917..3459080(-) (degS) [Bacillus velezensis strain A4]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGTCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCTGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment