Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACKPXQ_RS16885 Genome accession   NZ_CP176038
Coordinates   3457151..3457840 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain A4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3452151..3462840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS16850 (ACKPXQ_16850) - 3452349..3452831 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACKPXQ_RS16855 (ACKPXQ_16855) flgM 3452846..3453112 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACKPXQ_RS16860 (ACKPXQ_16860) - 3453182..3453601 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACKPXQ_RS16865 (ACKPXQ_16865) comFC 3453675..3454364 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  ACKPXQ_RS16870 (ACKPXQ_16870) - 3454370..3454654 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACKPXQ_RS16875 (ACKPXQ_16875) comFA 3454712..3456097 (-) 1386 WP_095060187.1 DEAD/DEAH box helicase Machinery gene
  ACKPXQ_RS16880 (ACKPXQ_16880) - 3456205..3457053 (-) 849 WP_003151387.1 DegV family protein -
  ACKPXQ_RS16885 (ACKPXQ_16885) degU 3457151..3457840 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKPXQ_RS16890 (ACKPXQ_16890) degS 3457917..3459080 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACKPXQ_RS16895 (ACKPXQ_16895) - 3459303..3459950 (+) 648 WP_007407485.1 YigZ family protein -
  ACKPXQ_RS16900 (ACKPXQ_16900) - 3459955..3461169 (+) 1215 WP_014419013.1 LCP family protein -
  ACKPXQ_RS16905 (ACKPXQ_16905) - 3461259..3462335 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1079543 ACKPXQ_RS16885 WP_003219701.1 3457151..3457840(-) (degU) [Bacillus velezensis strain A4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1079543 ACKPXQ_RS16885 WP_003219701.1 3457151..3457840(-) (degU) [Bacillus velezensis strain A4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment