Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACKPXQ_RS16865 Genome accession   NZ_CP176038
Coordinates   3453675..3454364 (-) Length   229 a.a.
NCBI ID   WP_199449054.1    Uniprot ID   -
Organism   Bacillus velezensis strain A4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3448675..3459364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPXQ_RS16830 (ACKPXQ_16830) fliW 3448766..3449197 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ACKPXQ_RS16835 (ACKPXQ_16835) - 3449227..3449796 (-) 570 WP_017418818.1 DUF6470 family protein -
  ACKPXQ_RS16840 (ACKPXQ_16840) flgL 3449887..3450804 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACKPXQ_RS16845 (ACKPXQ_16845) flgK 3450816..3452333 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  ACKPXQ_RS16850 (ACKPXQ_16850) - 3452349..3452831 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACKPXQ_RS16855 (ACKPXQ_16855) flgM 3452846..3453112 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACKPXQ_RS16860 (ACKPXQ_16860) - 3453182..3453601 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACKPXQ_RS16865 (ACKPXQ_16865) comFC 3453675..3454364 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  ACKPXQ_RS16870 (ACKPXQ_16870) - 3454370..3454654 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACKPXQ_RS16875 (ACKPXQ_16875) comFA 3454712..3456097 (-) 1386 WP_095060187.1 DEAD/DEAH box helicase Machinery gene
  ACKPXQ_RS16880 (ACKPXQ_16880) - 3456205..3457053 (-) 849 WP_003151387.1 DegV family protein -
  ACKPXQ_RS16885 (ACKPXQ_16885) degU 3457151..3457840 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKPXQ_RS16890 (ACKPXQ_16890) degS 3457917..3459080 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.91 Da        Isoelectric Point: 8.2927

>NTDB_id=1079541 ACKPXQ_RS16865 WP_199449054.1 3453675..3454364(-) (comFC) [Bacillus velezensis strain A4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1079541 ACKPXQ_RS16865 WP_199449054.1 3453675..3454364(-) (comFC) [Bacillus velezensis strain A4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
AGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment