Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ACKN8U_RS02475 | Genome accession | NZ_CP176035 |
| Coordinates | 533248..533841 (-) | Length | 197 a.a. |
| NCBI ID | WP_005480482.1 | Uniprot ID | Q87L64 |
| Organism | Vibrio parahaemolyticus strain L2181 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 528248..538841
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKN8U_RS02455 (ACKN8U_02455) | aroB | 529124..530224 (-) | 1101 | WP_193282555.1 | 3-dehydroquinate synthase | - |
| ACKN8U_RS02460 (ACKN8U_02460) | aroK | 530256..530774 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ACKN8U_RS02465 (ACKN8U_02465) | pilQ | 530963..532711 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| ACKN8U_RS02470 (ACKN8U_02470) | pilP | 532743..533258 (-) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| ACKN8U_RS02475 (ACKN8U_02475) | pilO | 533248..533841 (-) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACKN8U_RS02480 (ACKN8U_02480) | pilN | 533834..534412 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| ACKN8U_RS02485 (ACKN8U_02485) | pilM | 534396..535412 (-) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACKN8U_RS02490 (ACKN8U_02490) | - | 535555..538125 (+) | 2571 | WP_193232092.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23091.63 Da Isoelectric Point: 4.8225
>NTDB_id=1079448 ACKN8U_RS02475 WP_005480482.1 533248..533841(-) (pilO) [Vibrio parahaemolyticus strain L2181]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=1079448 ACKN8U_RS02475 WP_005480482.1 533248..533841(-) (pilO) [Vibrio parahaemolyticus strain L2181]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
72.589 |
100 |
0.726 |