Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ACKN8U_RS02480 | Genome accession | NZ_CP176035 |
| Coordinates | 533834..534412 (-) | Length | 192 a.a. |
| NCBI ID | WP_015297396.1 | Uniprot ID | A0A243VIJ8 |
| Organism | Vibrio parahaemolyticus strain L2181 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 528834..539412
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKN8U_RS02455 (ACKN8U_02455) | aroB | 529124..530224 (-) | 1101 | WP_193282555.1 | 3-dehydroquinate synthase | - |
| ACKN8U_RS02460 (ACKN8U_02460) | aroK | 530256..530774 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ACKN8U_RS02465 (ACKN8U_02465) | pilQ | 530963..532711 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| ACKN8U_RS02470 (ACKN8U_02470) | pilP | 532743..533258 (-) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| ACKN8U_RS02475 (ACKN8U_02475) | pilO | 533248..533841 (-) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACKN8U_RS02480 (ACKN8U_02480) | pilN | 533834..534412 (-) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| ACKN8U_RS02485 (ACKN8U_02485) | pilM | 534396..535412 (-) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACKN8U_RS02490 (ACKN8U_02490) | - | 535555..538125 (+) | 2571 | WP_193232092.1 | penicillin-binding protein 1A | - |
| ACKN8U_RS02495 (ACKN8U_02495) | oxyR | 538181..539089 (-) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.95 Da Isoelectric Point: 6.9944
>NTDB_id=1079449 ACKN8U_RS02480 WP_015297396.1 533834..534412(-) (pilN) [Vibrio parahaemolyticus strain L2181]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=1079449 ACKN8U_RS02480 WP_015297396.1 533834..534412(-) (pilN) [Vibrio parahaemolyticus strain L2181]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGAGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGAGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |