Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACKN8R_RS14860 | Genome accession | NZ_CP176031 |
| Coordinates | 3203971..3204840 (+) | Length | 289 a.a. |
| NCBI ID | WP_005493974.1 | Uniprot ID | A0A249W3M2 |
| Organism | Vibrio parahaemolyticus strain L2171 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3198971..3209840
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKN8R_RS14840 (ACKN8R_14845) | nadC | 3199351..3200238 (+) | 888 | WP_025638275.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACKN8R_RS14845 (ACKN8R_14850) | pilA | 3200502..3200966 (+) | 465 | WP_025524817.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACKN8R_RS14850 (ACKN8R_14855) | pilB | 3200973..3202658 (+) | 1686 | WP_193282266.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACKN8R_RS14855 (ACKN8R_14860) | pilC | 3202683..3203906 (+) | 1224 | WP_005462561.1 | type II secretion system F family protein | Machinery gene |
| ACKN8R_RS14860 (ACKN8R_14865) | pilD | 3203971..3204840 (+) | 870 | WP_005493974.1 | A24 family peptidase | Machinery gene |
| ACKN8R_RS14865 (ACKN8R_14870) | coaE | 3204841..3205455 (+) | 615 | WP_078558749.1 | dephospho-CoA kinase | - |
| ACKN8R_RS14870 (ACKN8R_14875) | zapD | 3205483..3206223 (+) | 741 | WP_023624252.1 | cell division protein ZapD | - |
| ACKN8R_RS14875 (ACKN8R_14880) | yacG | 3206292..3206486 (+) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| ACKN8R_RS14880 (ACKN8R_14885) | rplS | 3206886..3207239 (-) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| ACKN8R_RS14885 (ACKN8R_14890) | trmD | 3207281..3208024 (-) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACKN8R_RS14890 (ACKN8R_14895) | rimM | 3208052..3208600 (-) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| ACKN8R_RS14895 (ACKN8R_14900) | rpsP | 3208629..3208877 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32377.43 Da Isoelectric Point: 7.1971
>NTDB_id=1079416 ACKN8R_RS14860 WP_005493974.1 3203971..3204840(+) (pilD) [Vibrio parahaemolyticus strain L2171]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=1079416 ACKN8R_RS14860 WP_005493974.1 3203971..3204840(+) (pilD) [Vibrio parahaemolyticus strain L2171]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGCCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAGAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGCCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAGAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.927 |
100 |
0.889 |
| pilD | Vibrio cholerae strain A1552 |
73.611 |
99.654 |
0.734 |
| pilD | Acinetobacter baumannii D1279779 |
52.239 |
92.734 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.866 |
92.734 |
0.481 |
| pilD | Neisseria gonorrhoeae MS11 |
47.101 |
95.502 |
0.45 |