Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACKQF3_RS05395 Genome accession   NZ_CP175806
Coordinates   1143550..1145718 (+) Length   722 a.a.
NCBI ID   WP_173405427.1    Uniprot ID   -
Organism   Vibrio cholerae strain N19-2759     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1138550..1150718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKQF3_RS05370 (ACKQF3_05370) - 1138938..1139513 (-) 576 WP_000999601.1 PilZ domain-containing protein -
  ACKQF3_RS05375 (ACKQF3_05375) lolC 1139689..1140897 (+) 1209 WP_032476337.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACKQF3_RS05380 (ACKQF3_05380) lolD 1140890..1141576 (+) 687 WP_032476336.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACKQF3_RS05385 (ACKQF3_05385) lolE 1141577..1142821 (+) 1245 WP_000493013.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACKQF3_RS05390 (ACKQF3_05390) - 1142936..1143466 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  ACKQF3_RS05395 (ACKQF3_05395) comEC 1143550..1145718 (+) 2169 WP_173405427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACKQF3_RS05400 (ACKQF3_05400) msbA 1145749..1147497 (+) 1749 WP_000052155.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACKQF3_RS05405 (ACKQF3_05405) lpxK 1147500..1148507 (+) 1008 WP_001932532.1 tetraacyldisaccharide 4'-kinase -
  ACKQF3_RS05410 (ACKQF3_05410) - 1148488..1148667 (+) 180 WP_317006865.1 Trm112 family protein -
  ACKQF3_RS05415 (ACKQF3_05415) kdsB 1148667..1149425 (+) 759 WP_317006866.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 81596.32 Da        Isoelectric Point: 7.9738

>NTDB_id=1078973 ACKQF3_RS05395 WP_173405427.1 1143550..1145718(+) (comEC) [Vibrio cholerae strain N19-2759]
MPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLI
HEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTAYQIVQESGIR
SSLFFELEQLTHTSSYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAQLLWSP
FVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALLMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQ
LASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPSMAAAYWPWV
DWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMNLKACSLLLGMMGLWWWFPSLTPLWRMDVLDVGHGLAI
VIEQDERTIVYDTGSSWPGGSYVQSVIEPILQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCI
RGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSKHSVLLSGDVTAMGEWLLARDGAQLQSEVMIVPHHGSKTSS
TAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFYPDQLDWFTQRSLGWQPWYRQMLRKG
VE

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=1078973 ACKQF3_RS05395 WP_173405427.1 1143550..1145718(+) (comEC) [Vibrio cholerae strain N19-2759]
ATGCCGAGTTGGGGTTGGGCTTGGTTATGCCTTATTGTTATGGTTTTGCTCGGTTATCACCGAGTTGGCCGTCAATTCCT
TGGCTTCGTGGCTGCCATACTAACCATTGTGCTACAGGGCAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAG
GGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTTTTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATT
CATGAAGTGAATGGACAAACCTTAAACAAAATGACTCGCCCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAA
TGACCGCGTCGAATTTTCGGTAACTCTCAAGCCGATAGTGGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATT
ACATGGCGCAATCTGTCGTCGCACGAGCGGTCGTAAAACCTGACACTGCTTATCAAATTGTGCAAGAGAGTGGCATAAGG
TCAAGTTTGTTTTTTGAGCTAGAGCAATTAACGCATACCAGCTCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGA
GCGAAAAGGTATTGATGAGCAAGAGTGGCAAGCCTTACGCAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGC
ACATTGGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGCTCGGCATGATGCGTCTTCATGCTCAGTTATTGTGGTCCCCT
TTTGTGTGTGGGGCTTTACTGGCGGTGCTCTATGCTTGGCTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATTAT
GTGCTTACTCAATGTGGCGTTGCTCATGTTGGCTTTTCCTCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGG
TCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTTTCTGGATGTCGTTTTTGGCGGTCGCGATTGTTCTCTACCAA
TTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCTCTGCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCGCC
GGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGCAGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGG
TGATTGTCCCAGCTTTGTTTTTGGGTCTATTACTCATGGTGGTATGGCCTAGTATGGCCGCCGCTTACTGGCCTTGGGTG
GATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTTGCCGATGTAGGCTGGTGGGTGGTCCCCAGCAAAGTACAAGG
TGTGGTCGCAGCGAGTGTGGCCATCCTCTTACTTTATCGATTTATGAACTTAAAAGCCTGCAGCTTATTATTGGGTATGA
TGGGCTTATGGTGGTGGTTTCCCTCTCTCACTCCACTTTGGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATT
GTGATTGAGCAAGATGAGCGAACAATTGTCTACGATACAGGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGAT
TGAGCCTATTCTCCAACAGCGAGGGCTACGCCAAGTCGATGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTG
ATTGGCAAGGTTTAGCTGAGCGCTGGCAACCTAATTGGATTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATC
CGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACGGTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCA
GCATTCGTGTGTGATTCGTATGACCGATACTCAGTCTAAGCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGG
AGTGGCTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTGAGGTGATGATCGTGCCGCACCACGGCAGTAAAACGTCGTCC
ACCGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCGATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAA
TCCGCAAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGAGTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTT
TCTATCCAGATCAGCTGGATTGGTTTACCCAGCGTAGCCTTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGA
GTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(183-439)

Domain of unknown function (DUF4131) (DUF4131)

(7-148)

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

98.615

100

0.986
  comEC Vibrio parahaemolyticus RIMD 2210633

41.257

100

0.418
  comEC Vibrio campbellii strain DS40M4

41.265

100

0.416

Multiple sequence alignment