Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACJ23A_RS17965 Genome accession   NZ_CP175648
Coordinates   3795091..3795909 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain LUH5537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3790091..3800909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ23A_RS17930 (ACJ23A_17930) - 3790673..3790803 (-) 131 Protein_3494 hypothetical protein -
  ACJ23A_RS17935 (ACJ23A_17935) rpoZ 3790842..3791120 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACJ23A_RS17940 (ACJ23A_17940) gmk 3791193..3791822 (-) 630 WP_000015937.1 guanylate kinase -
  ACJ23A_RS17945 (ACJ23A_17945) ispH 3791945..3792895 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACJ23A_RS17950 (ACJ23A_17950) fimU 3793065..3793538 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACJ23A_RS17955 (ACJ23A_17955) pilV 3793532..3794092 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACJ23A_RS17960 (ACJ23A_17960) pilW 3794093..3795094 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ACJ23A_RS17965 (ACJ23A_17965) pilX 3795091..3795909 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACJ23A_RS17970 (ACJ23A_17970) pilY1 3795921..3799775 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ACJ23A_RS17975 (ACJ23A_17975) pilY2 3799788..3800270 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ACJ23A_RS17980 (ACJ23A_17980) pilE 3800267..3800692 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1078459 ACJ23A_RS17965 WP_000149374.1 3795091..3795909(+) (pilX) [Acinetobacter baumannii strain LUH5537]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1078459 ACJ23A_RS17965 WP_000149374.1 3795091..3795909(+) (pilX) [Acinetobacter baumannii strain LUH5537]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment