Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACJ1CH_RS11970 Genome accession   NZ_CP175541
Coordinates   2505019..2505354 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Tcba05     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2500019..2510354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ1CH_RS11950 (ACJ1CH_11950) gcvT 2500627..2501727 (-) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -
  ACJ1CH_RS11955 (ACJ1CH_11955) - 2502153..2503823 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACJ1CH_RS11960 (ACJ1CH_11960) - 2503841..2504635 (+) 795 WP_003153106.1 YqhG family protein -
  ACJ1CH_RS11965 (ACJ1CH_11965) sinI 2504812..2504985 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACJ1CH_RS11970 (ACJ1CH_11970) sinR 2505019..2505354 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACJ1CH_RS11975 (ACJ1CH_11975) tasA 2505402..2506187 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  ACJ1CH_RS11980 (ACJ1CH_11980) sipW 2506251..2506835 (-) 585 WP_003153100.1 signal peptidase I SipW -
  ACJ1CH_RS11985 (ACJ1CH_11985) tapA 2506807..2507478 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  ACJ1CH_RS11990 (ACJ1CH_11990) - 2507738..2508067 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  ACJ1CH_RS11995 (ACJ1CH_11995) - 2508107..2508286 (-) 180 WP_003153093.1 YqzE family protein -
  ACJ1CH_RS12000 (ACJ1CH_12000) comGG 2508343..2508720 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACJ1CH_RS12005 (ACJ1CH_12005) comGF 2508721..2509221 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  ACJ1CH_RS12010 (ACJ1CH_12010) comGE 2509130..2509444 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACJ1CH_RS12015 (ACJ1CH_12015) comGD 2509428..2509865 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACJ1CH_RS12020 (ACJ1CH_12020) comGC 2509855..2510163 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1078042 ACJ1CH_RS11970 WP_003153104.1 2505019..2505354(+) (sinR) [Bacillus velezensis strain Tcba05]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1078042 ACJ1CH_RS11970 WP_003153104.1 2505019..2505354(+) (sinR) [Bacillus velezensis strain Tcba05]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment