Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACJED4_RS10805 Genome accession   NZ_CP174518
Coordinates   2089642..2089935 (+) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain G03     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2084642..2094935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED4_RS10775 - 2085145..2085387 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  ACJED4_RS10780 - 2085600..2085980 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACJED4_RS10790 - 2086206..2087075 (+) 870 WP_017367596.1 STAS domain-containing protein -
  ACJED4_RS10795 comGA 2087533..2088603 (+) 1071 WP_019743634.1 competence type IV pilus ATPase ComGA Machinery gene
  ACJED4_RS10800 comGB 2088584..2089624 (+) 1041 WP_079920615.1 competence type IV pilus assembly protein ComGB -
  ACJED4_RS10805 comGC 2089642..2089935 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ACJED4_RS10810 comGD 2089928..2090374 (+) 447 WP_035702770.1 competence type IV pilus minor pilin ComGD -
  ACJED4_RS10815 comGE 2090358..2090672 (+) 315 WP_335372428.1 competence type IV pilus minor pilin ComGE -
  ACJED4_RS10820 comGF 2090614..2091111 (+) 498 WP_019743636.1 competence type IV pilus minor pilin ComGF -
  ACJED4_RS10825 - 2091108..2091491 (+) 384 WP_008342190.1 competence type IV pilus minor pilin ComGG -
  ACJED4_RS10830 - 2091552..2091746 (+) 195 WP_008342191.1 YqzE family protein -
  ACJED4_RS10835 - 2091781..2092107 (-) 327 WP_039166025.1 DUF3889 domain-containing protein -
  ACJED4_RS10840 tapA 2092360..2092887 (+) 528 WP_099496603.1 amyloid fiber anchoring/assembly protein TapA -
  ACJED4_RS10845 sipW 2092938..2093510 (+) 573 WP_017357979.1 signal peptidase I SipW -
  ACJED4_RS10850 tasA 2093569..2094369 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  ACJED4_RS10855 sinR 2094437..2094772 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=1077654 ACJED4_RS10805 WP_008342186.1 2089642..2089935(+) (comGC) [Bacillus altitudinis strain G03]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1077654 ACJED4_RS10805 WP_008342186.1 2089642..2089935(+) (comGC) [Bacillus altitudinis strain G03]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment