Detailed information NTG1077174

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJMQR_RS19220
• Genome accession: NZ_CP174465
• Coordinates: 3992773..3993645 (+)
• Length: 290 a.a.
• NCBI ID: WP_405118999.1
• Uniprot ID: -
• Organism: Pseudomonas leptonychotis strain TMP19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3987773..3998645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJMQR_RS19205 (ACJMQR_19205)	-	3989157..3989624 (-)	468	WP_405118996.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACJMQR_RS19210 (ACJMQR_19210)	pilB	3989845..3991548 (+)	1704	WP_405118997.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACJMQR_RS19215 (ACJMQR_19215)	pilC	3991552..3992769 (+)	1218	WP_405118998.1	type II secretion system F family protein	Machinery gene
ACJMQR_RS19220 (ACJMQR_19220)	pilD	3992773..3993645 (+)	873	WP_405118999.1	prepilin peptidase	Machinery gene
ACJMQR_RS19225 (ACJMQR_19225)	coaE	3993807..3994421 (+)	615	WP_405119000.1	dephospho-CoA kinase	-
ACJMQR_RS19230 (ACJMQR_19230)	yacG	3994418..3994618 (+)	201	WP_405119001.1	DNA gyrase inhibitor YacG	-
ACJMQR_RS19235 (ACJMQR_19235)	-	3994663..3994878 (-)	216	WP_405119002.1	hypothetical protein	-
ACJMQR_RS19240 (ACJMQR_19240)	-	3994983..3995672 (-)	690	WP_405119003.1	energy-coupling factor ABC transporter permease	-
ACJMQR_RS19245 (ACJMQR_19245)	-	3995817..3996446 (+)	630	WP_405119004.1	DUF1780 domain-containing protein	-
ACJMQR_RS19250 (ACJMQR_19250)	-	3996443..3996937 (+)	495	WP_405119005.1	MOSC domain-containing protein	-
ACJMQR_RS19255 (ACJMQR_19255)	-	3997016..3997189 (+)	174	WP_136663137.1	DUF3094 family protein	-
ACJMQR_RS19260 (ACJMQR_19260)	-	3997253..3998554 (+)	1302	WP_405119006.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32080.16 Da
• Isoelectric Point: 6.7327

>NTDB_id=1077174 ACJMQR_RS19220 WP_405118999.1 3992773..3993645(+) (pilD) [Pseudomonas leptonychotis strain TMP19]
MSVIDFLASHVLAFVLCALLIGLLVGSFLNVLIYRLPKMMHRDWREQAREILELPVEAQAATFNLVLPNSSCPHCAHEIK
PWENIPVVSYLFLRGKCSSCKVPISLRYPLVELSCGLLSAYIAWHFGFTWQAGGMLLLTWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIANSFGLFTSLEDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGLLMLRLRNAETSTPIPFGPYLAIAGWIALLWGEQITASYLQIAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1077174 ACJMQR_RS19220 WP_405118999.1 3992773..3993645(+) (pilD) [Pseudomonas leptonychotis strain TMP19]
ATGTCCGTAATCGATTTTCTGGCCAGCCATGTGCTGGCCTTTGTTTTATGCGCACTGCTTATCGGTTTATTGGTTGGCAG
CTTTCTCAACGTATTGATTTATCGTCTACCAAAAATGATGCACCGCGACTGGCGTGAACAGGCTCGTGAAATATTGGAGT
TACCAGTCGAAGCCCAGGCAGCAACATTCAACTTGGTACTGCCCAACTCAAGCTGCCCGCACTGCGCCCATGAAATAAAG
CCTTGGGAGAACATCCCGGTTGTTAGCTACCTGTTTCTGCGCGGCAAATGCTCCAGCTGTAAAGTACCGATTAGCCTGCG
CTATCCACTGGTTGAGCTGAGCTGCGGCCTGTTATCCGCCTACATTGCCTGGCACTTTGGTTTTACCTGGCAAGCCGGCG
GCATGCTGCTGTTGACCTGGGGCTTGCTGGCGATGAGCCTAATCGATGCTGATCACCAGCTACTACCGGACTCACTAGTA
CTGCCGTTACTGTGGCTCGGTTTAATCGCCAATAGCTTCGGCCTGTTTACCAGCCTGGAAGATGCACTCTGGGGCGCAAT
TGCCGGCTACTTGAGTCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTAACCGGCAAGGAAGGCATGGGCTATGGTGACT
TCAAGCTGCTGGCCATGCTCGGCGCGTGGGGTGGCTGGCAGGTATTACCGCTGACGATATTACTGTCATCTCTGGTAGGC
GCTGTACTCGGTCTACTCATGCTGCGCCTGCGTAACGCTGAAACCAGCACCCCCATCCCTTTCGGCCCTTACCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGAGCAAATCACCGCCAGCTACCTGCAGATTGCCGGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.678	94.138	0.524
pilD	Vibrio campbellii strain DS40M4	54.212	94.138	0.51
pilD	Acinetobacter baumannii D1279779	51.049	98.621	0.503
pilD	Acinetobacter nosocomialis M2	50.175	98.276	0.493
pilD	Neisseria gonorrhoeae MS11	50.57	90.69	0.459