Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACJD0W_RS04945 Genome accession   NZ_CP174456
Coordinates   1054272..1056527 (+) Length   751 a.a.
NCBI ID   WP_407832858.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1049272..1061527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS04920 - 1049563..1050132 (-) 570 WP_407832857.1 PilZ domain-containing protein -
  ACJD0W_RS04925 lolC 1050399..1051607 (+) 1209 WP_071235725.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACJD0W_RS04930 lolD 1051600..1052307 (+) 708 WP_010447138.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACJD0W_RS04935 lolE 1052310..1053554 (+) 1245 WP_010447140.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACJD0W_RS04940 - 1053754..1054263 (-) 510 WP_010447143.1 DUF2062 domain-containing protein -
  ACJD0W_RS04945 comEC 1054272..1056527 (+) 2256 WP_407832858.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACJD0W_RS04950 msbA 1056559..1058307 (+) 1749 WP_010447147.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACJD0W_RS04955 lpxK 1058313..1059320 (+) 1008 WP_407832859.1 tetraacyldisaccharide 4'-kinase -
  ACJD0W_RS04960 - 1059301..1059480 (+) 180 WP_005378451.1 Trm112 family protein -
  ACJD0W_RS04965 kdsB 1059480..1060238 (+) 759 WP_407832860.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84956.73 Da        Isoelectric Point: 8.7418

>NTDB_id=1077114 ACJD0W_RS04945 WP_407832858.1 1054272..1056527(+) (comEC) [Vibrio rotiferianus strain BD182406]
MTLSEKSLALALFVASVFSSAWWPMMPSWHWLLLGIFAVGSIIKLRRGLMCIGVIWGCMVVIAHGNVMEQQKQALFKAGV
NITINGKVDSPFTQISHGYEGIVVVSHVNSQSLLPFFKPKVRLITSIPLGVNSEIKAEVELKPITGLKNEVGFDSENFSL
SQGIVARATSMKDSRWIVRSKSALRQTLIARINASIAGLYNEPLIRALSYSDRSLLTPDLWKSLRDSGLIHLVSISGLHI
GMALSFGCFLGFLFRLAIPWANHLPYIFGLVFAVAYSWLADFSLPTVRALSVCAIYLFLKYHKLHWPSWRILLLAISGQL
LVEPFSFLGSSFWLSYLSVVAVLVVLNIVWMNQYSWLNILKHIIAVQLALSLFILPISGYFFSGFSAVSPLFNLIFIPWF
SLVVVPMIFIALLFTCLTADVFSWIWIFVDGVLWPLNWALGLAEETWFAVSDDSLILITLILFCLFGLRFLTVNSILLII
SIATLYLVFPFKQYYWRVDVLDVGHGLSVLFEKDDKALLYDTGKSWRGGSIAERVISPILHSKGHSQIDSLILSHLDDDH
AGGRRFLEENFEPNDKFSSQLLPDYLPCIEGEVWYWQGLKFEAIWPPKLVKRAFNPHSCVIRVVDPVSNFRILLTGDIEA
ISEWILIRRPELLDSDIVIVPHHGSKSSSNPKFIEAINPQIAIASLAKNNRWGMPSPLVQQAYTSLGTSWFDTGESGQVS
IYVWRDFWRLKTQRNKMFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=1077114 ACJD0W_RS04945 WP_407832858.1 1054272..1056527(+) (comEC) [Vibrio rotiferianus strain BD182406]
ATGACTCTCTCAGAAAAAAGTTTGGCCTTGGCGTTATTTGTAGCAAGCGTTTTTTCATCTGCGTGGTGGCCGATGATGCC
GAGTTGGCATTGGTTGCTGCTGGGTATTTTTGCCGTTGGCTCAATAATCAAACTACGTCGAGGCTTAATGTGCATTGGCG
TAATTTGGGGCTGTATGGTGGTTATTGCCCATGGCAATGTCATGGAACAACAAAAACAAGCCCTGTTTAAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGTCGTTGTTAGCCA
CGTAAATTCTCAATCTCTCTTACCATTTTTTAAACCAAAAGTTCGGTTGATAACCTCAATTCCACTTGGTGTTAACAGTG
AAATTAAGGCGGAAGTAGAGTTAAAGCCGATTACGGGCTTAAAAAACGAGGTTGGTTTTGATTCAGAAAACTTTTCTTTA
AGTCAGGGTATTGTGGCAAGAGCGACTTCGATGAAAGACAGTCGCTGGATTGTTCGCTCAAAAAGCGCTCTCAGACAAAC
ACTCATCGCGCGTATTAACGCCAGTATTGCAGGTTTATATAATGAACCTTTAATAAGAGCTCTGAGTTACAGCGATCGCT
CATTACTTACTCCCGACTTATGGAAAAGCTTGCGAGACAGTGGACTTATTCATCTAGTATCCATTTCTGGTTTACACATT
GGCATGGCGCTCTCATTTGGCTGTTTTCTTGGTTTTTTGTTTCGCCTTGCAATTCCGTGGGCTAATCATTTGCCCTACAT
CTTTGGGCTAGTTTTTGCTGTTGCTTATTCTTGGCTTGCTGATTTTTCGTTGCCAACTGTGCGCGCCCTAAGTGTATGCG
CGATCTATTTGTTTCTTAAGTACCATAAACTGCATTGGCCAAGTTGGAGGATTTTACTGCTCGCCATTAGTGGGCAACTT
TTAGTCGAGCCGTTTTCTTTCCTAGGTAGCAGTTTTTGGTTGTCTTACTTATCGGTAGTTGCGGTGCTTGTTGTACTTAA
TATTGTTTGGATGAACCAATATAGTTGGCTTAACATTTTGAAGCATATAATCGCAGTTCAACTTGCTCTGTCGCTGTTCA
TTTTGCCAATTAGCGGCTATTTTTTTTCAGGTTTTAGCGCAGTATCTCCCCTTTTTAATCTGATTTTTATCCCTTGGTTT
AGCCTGGTTGTGGTTCCTATGATATTTATAGCGCTACTTTTCACCTGCTTGACCGCAGATGTTTTTAGTTGGATATGGAT
ATTCGTCGATGGGGTACTTTGGCCTCTAAATTGGGCGTTAGGATTGGCTGAGGAAACTTGGTTTGCTGTTAGTGATGACT
CACTTATTCTTATAACGTTGATATTGTTTTGTTTGTTTGGGCTTCGTTTTCTTACTGTGAATAGCATCCTACTCATCATC
AGTATTGCCACGCTCTATCTCGTCTTTCCCTTTAAACAGTATTACTGGCGTGTTGATGTTTTAGATGTGGGCCACGGGCT
ATCAGTGTTGTTTGAGAAAGACGATAAGGCATTGCTCTATGATACGGGGAAATCATGGAGAGGGGGGAGCATTGCTGAAA
GAGTTATCTCGCCTATCCTACATTCAAAAGGGCACTCTCAAATTGACTCTTTGATCCTAAGTCATTTGGATGATGACCAC
GCAGGAGGAAGGAGGTTTTTAGAAGAGAATTTTGAACCTAATGATAAGTTCAGTAGTCAGCTTCTGCCGGATTACCTTCC
TTGTATAGAGGGTGAAGTCTGGTATTGGCAAGGTTTGAAGTTTGAAGCAATCTGGCCACCTAAATTAGTAAAGCGTGCTT
TTAACCCTCACTCGTGCGTCATTAGGGTCGTTGATCCTGTTTCTAATTTTCGAATTTTACTAACCGGAGATATCGAGGCC
ATAAGTGAATGGATTTTAATCAGACGACCAGAACTGTTAGATAGTGATATCGTGATTGTCCCCCACCATGGCAGTAAAAG
TTCTTCTAATCCCAAGTTTATTGAAGCAATAAACCCTCAAATAGCCATCGCTTCTTTGGCTAAAAATAATCGGTGGGGGA
TGCCATCCCCACTTGTACAGCAGGCTTACACGTCTTTGGGCACATCATGGTTTGATACTGGAGAATCTGGGCAGGTGAGT
ATTTATGTATGGCGGGATTTTTGGCGATTAAAAACTCAACGTAACAAGATGTTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

58.777

100

0.589
  comEC Vibrio parahaemolyticus RIMD 2210633

56.839

100

0.57
  comEC Vibrio cholerae strain A1552

40.981

100

0.411

Multiple sequence alignment