Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI3ES_RS00410 Genome accession   NZ_CP174386
Coordinates   75482..76045 (+) Length   187 a.a.
NCBI ID   WP_004911137.1    Uniprot ID   A0A9X3IPZ0
Organism   Leuconostoc falkenbergense strain SAEED 24451     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 70482..81045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ES_RS00390 - 71042..72718 (+) 1677 WP_114667324.1 ABC transporter ATP-binding protein -
  ACI3ES_RS00395 - 72720..73547 (+) 828 WP_114667325.1 energy-coupling factor transporter transmembrane protein EcfT -
  ACI3ES_RS00400 pepV 73529..74974 (+) 1446 WP_114667326.1 dipeptidase PepV -
  ACI3ES_RS00405 rpsF 75154..75450 (+) 297 WP_004911142.1 30S ribosomal protein S6 -
  ACI3ES_RS00410 ssb 75482..76045 (+) 564 WP_004911137.1 single-stranded DNA-binding protein Machinery gene
  ACI3ES_RS00415 rpsR 76078..76362 (+) 285 WP_004911134.1 30S ribosomal protein S18 -
  ACI3ES_RS00420 - 76489..78516 (+) 2028 WP_114667327.1 DHH family phosphoesterase -
  ACI3ES_RS00425 rplI 78526..78978 (+) 453 WP_004911126.1 50S ribosomal protein L9 -
  ACI3ES_RS00430 dnaB 78980..80443 (+) 1464 WP_114667328.1 replicative DNA helicase -
  ACI3ES_RS00435 - 80467..81015 (-) 549 WP_036066470.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20111.69 Da        Isoelectric Point: 4.5764

>NTDB_id=1077009 ACI3ES_RS00410 WP_004911137.1 75482..76045(+) (ssb) [Leuconostoc falkenbergense strain SAEED 24451]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAIEGRLQTR
NYENNAGQRVYVTEVVADNFSLLESRAESEKRRAQNGSSNSNAGSYNNGSNDHSFGGNDNSFSGVDPFASANQGSANKSA
TSENDAPNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1077009 ACI3ES_RS00410 WP_004911137.1 75482..76045(+) (ssb) [Leuconostoc falkenbergense strain SAEED 24451]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGCGATGTGGAATTACGTTATACCCAATCGGGTGTAGCTGTCGG
CACGTTTAGCTTGGCGGTTAACCGTCAGTTCACTAACGCAAGTGGTGAACGTGAAGCTGACTTTATTAACGCAGTTATTT
GGCGTAAAGCAGCTGAAAACTTTGCTAACTTTACTGGAAAAGGCGCACTTGTTGCGATTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAACAACGCAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCGGATAATTTCTCATTACTAGAATCCCGTGC
AGAAAGTGAAAAGCGTCGTGCACAAAACGGCTCTTCTAACAGCAATGCGGGTAGCTATAATAATGGCTCAAATGACCATT
CATTTGGCGGTAATGATAATTCGTTTAGTGGTGTTGATCCCTTTGCTAGTGCGAACCAAGGTTCAGCTAATAAGTCAGCA
ACATCTGAAAACGATGCCCCTAACCCATTTGCGGCTAGTGGCAACACTGAAATTGATATATCAGATGATGATTTACCATT
TTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.567

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.255

100

0.545

Multiple sequence alignment