Detailed information NTG1076659

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACI6TB_RS01735
• Genome accession: NZ_CP174270
• Coordinates: 346249..347469 (+)
• Length: 406 a.a.
• NCBI ID: WP_406812409.1
• Uniprot ID: -
• Organism: Histophilus somni strain HSNMG-1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 341249..352469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI6TB_RS01700 (ACI6TB_01700)	-	342759..343001 (+)	243	WP_406812406.1	hypothetical protein	-
ACI6TB_RS01705 (ACI6TB_01705)	-	343040..343774 (+)	735	WP_406812407.1	4'-phosphopantetheinyl transferase family protein	-
ACI6TB_RS01715 (ACI6TB_01715)	gltX	344112..345554 (-)	1443	WP_406812408.1	glutamate--tRNA ligase	-
ACI6TB_RS01735 (ACI6TB_01735)	pilC	346249..347469 (+)	1221	WP_406812409.1	type II secretion system F family protein	Machinery gene
ACI6TB_RS01740 (ACI6TB_01740)	-	347466..348173 (+)	708	WP_406812410.1	prepilin peptidase	-
ACI6TB_RS01745 (ACI6TB_01745)	coaE	348193..348840 (+)	648	WP_075321644.1	dephospho-CoA kinase	-
ACI6TB_RS01750 (ACI6TB_01750)	yacG	348837..349031 (+)	195	WP_011608616.1	DNA gyrase inhibitor YacG	-
ACI6TB_RS01755 (ACI6TB_01755)	-	349435..350811 (+)	1377	WP_012341585.1	sodium:alanine symporter family protein	-
ACI6TB_RS01760 (ACI6TB_01760)	raiA	351047..351364 (+)	318	WP_132994692.1	ribosome-associated translation inhibitor RaiA	-
ACI6TB_RS01765 (ACI6TB_01765)	hpt	351568..352107 (+)	540	WP_011608620.1	hypoxanthine phosphoribosyltransferase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 46714.13 Da
• Isoelectric Point: 9.7933

>NTDB_id=1076659 ACI6TB_RS01735 WP_406812409.1 346249..347469(+) (pilC) [Histophilus somni strain HSNMG-1]
MQNLKLFSWKATNFLQQKQAGMLVIENVQEAKRYLLQQGLNNIYLQRHWQLNKKPKKIEFCDLLTQLAMLLQSSIPLKDS
LQILLRNCVNISLNQWIRYILKNLEGGLSFSQSVAQSGLYFSYQERQLISVGEMTGDLASVCQQIAEHRQQALALQRKIQ
KILLYPMIVLSISIILTALLLIFIVPQFAEMYGSNQSELPFFTQLLLNISSFLQQYFFHMIAVSILFFYLIKLRLHNSYS
FQPKKDWFLSHVPLLNKIIRLNRTISFCRSLGLMLNSGIPLQQSLYSFLPQNSINIQKKIEGDLTLINEVKLTLRGIEQG
YKFSQSVSSNLFSIQTQQMLQVGEKSGNLGLILQHIAENQQQQLDHQIDLLSQMLEPFMMVIIGGLIGLIMLGMYLPIFN
MGSLIQ

Nucleotide

• Length: 1221 bp

>NTDB_id=1076659 ACI6TB_RS01735 WP_406812409.1 346249..347469(+) (pilC) [Histophilus somni strain HSNMG-1]
ATGCAGAATTTGAAGCTATTTTCTTGGAAAGCCACTAATTTTTTACAGCAAAAACAAGCTGGAATGCTTGTTATCGAAAA
TGTACAAGAGGCAAAACGCTATTTATTACAACAAGGGCTAAACAATATATATTTACAGCGTCATTGGCAACTGAATAAAA
AGCCTAAAAAAATAGAATTTTGTGATCTATTAACTCAATTAGCAATGTTATTACAATCCTCAATTCCTTTAAAAGATAGC
TTACAAATTTTATTGAGAAATTGTGTTAATATTTCTTTAAATCAATGGATTAGATATATTTTAAAAAATCTTGAAGGAGG
ATTATCTTTTTCACAATCTGTGGCTCAATCAGGTCTATATTTTTCTTATCAAGAACGCCAACTCATTTCTGTTGGAGAAA
TGACGGGAGATTTAGCCTCTGTTTGCCAACAAATAGCAGAACATCGTCAGCAGGCATTAGCATTACAACGCAAAATTCAA
AAAATTTTACTCTATCCAATGATAGTTTTAAGTATTTCTATCATTCTCACCGCACTTTTATTAATTTTTATCGTGCCACA
ATTTGCCGAAATGTACGGTTCTAATCAATCCGAGCTTCCTTTTTTTACGCAACTATTGTTAAACATATCCTCTTTTTTAC
AACAGTATTTTTTTCATATGATAGCGGTATCTATTTTATTTTTTTATCTAATAAAATTACGTTTACACAATTCATATAGT
TTTCAACCCAAAAAAGATTGGTTTTTATCGCATGTGCCATTGTTAAATAAAATTATTCGGCTTAATAGAACGATAAGTTT
TTGCCGTAGTTTAGGATTAATGCTCAACTCAGGCATTCCTTTACAACAAAGTTTATATTCTTTCCTTCCCCAAAACTCTA
TCAACATACAGAAAAAGATTGAGGGAGATCTCACGTTAATTAATGAAGTAAAGCTAACATTACGTGGTATCGAACAAGGA
TATAAATTCTCTCAGTCTGTAAGCAGTAATTTGTTTTCTATACAAACACAACAAATGCTACAAGTTGGTGAAAAGAGTGG
AAATCTAGGTTTAATTCTGCAACATATCGCAGAAAATCAGCAACAACAGTTAGATCATCAAATTGATTTACTTTCACAAA
TGTTAGAACCGTTTATGATGGTGATCATTGGCGGATTAATAGGCTTGATTATGTTAGGTATGTATTTACCAATCTTTAAT
ATGGGAAGTTTAATTCAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (64-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Haemophilus influenzae Rd KW20	53.846	99.261	0.534
pilC	Haemophilus influenzae 86-028NP	53.102	99.261	0.527
pilC	Glaesserella parasuis strain SC1401	40.148	100	0.401