Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AABJ90_RS04960 Genome accession   NZ_AP028964
Coordinates   981119..981763 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 976119..986763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS04930 (BsubNA05_09660) - 976468..976836 (-) 369 WP_338382513.1 hypothetical protein -
  AABJ90_RS04935 - 976952..977077 (-) 126 WP_003228793.1 hypothetical protein -
  AABJ90_RS04940 (BsubNA05_09670) degQ 977299..977439 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AABJ90_RS04945 (BsubNA05_09680) - 977624..978487 (+) 864 WP_032722437.1 polyprenyl synthetase family protein -
  AABJ90_RS04950 (BsubNA05_09690) comX 978489..978710 (+) 222 WP_014480704.1 competence pheromone ComX -
  AABJ90_RS04955 (BsubNA05_09700) comP 978726..981038 (+) 2313 WP_326149885.1 histidine kinase Regulator
  AABJ90_RS04960 (BsubNA05_09710) comA 981119..981763 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AABJ90_RS04965 (BsubNA05_09720) yuxO 981782..982162 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  AABJ90_RS04970 (BsubNA05_09730) mnhG 982201..982575 (-) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  AABJ90_RS04975 (BsubNA05_09740) mrpF 982559..982843 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AABJ90_RS04980 (BsubNA05_09750) mrpE 982843..983319 (-) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  AABJ90_RS04985 (BsubNA05_09760) mrpD 983325..984806 (-) 1482 WP_338382515.1 Na+/H+ antiporter subunit D -
  AABJ90_RS04990 (BsubNA05_09770) mrpC 984799..985140 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AABJ90_RS04995 (BsubNA05_09780) mrpB 985140..985571 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=107565 AABJ90_RS04960 WP_003220716.1 981119..981763(+) (comA) [Bacillus subtilis strain NA05 = NBRC 116153]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=107565 AABJ90_RS04960 WP_003220716.1 981119..981763(+) (comA) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment