Detailed information NTG1074956

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACJA3S_RS03275
• Genome accession: NZ_CP174199
• Coordinates: 709581..710447 (-)
• Length: 288 a.a.
• NCBI ID: WP_406820817.1
• Uniprot ID: -
• Organism: Pseudomonas sp. KnCO4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 704581..715447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJA3S_RS03245 (ACJA3S_03245)	-	705378..706673 (-)	1296	WP_170028158.1	NAD(P)/FAD-dependent oxidoreductase	-
ACJA3S_RS03250 (ACJA3S_03250)	-	706758..706931 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
ACJA3S_RS03255 (ACJA3S_03255)	-	707065..707694 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
ACJA3S_RS03260 (ACJA3S_03260)	-	707886..708569 (+)	684	WP_406820815.1	energy-coupling factor ABC transporter permease	-
ACJA3S_RS03265 (ACJA3S_03265)	yacG	708761..708961 (-)	201	WP_170028160.1	DNA gyrase inhibitor YacG	-
ACJA3S_RS03270 (ACJA3S_03270)	coaE	708958..709581 (-)	624	WP_406820816.1	dephospho-CoA kinase	-
ACJA3S_RS03275 (ACJA3S_03275)	pilD	709581..710447 (-)	867	WP_406820817.1	prepilin peptidase	Machinery gene
ACJA3S_RS03280 (ACJA3S_03280)	-	710450..711658 (-)	1209	WP_406820818.1	type II secretion system F family protein	-
ACJA3S_RS03285 (ACJA3S_03285)	pilA	711875..712285 (+)	411	WP_406820819.1	pilin	Machinery gene
ACJA3S_RS03295 (ACJA3S_03295)	-	712592..712708 (+)	117	Protein_630	Arm DNA-binding domain-containing protein	-
ACJA3S_RS03300 (ACJA3S_03300)	-	713317..714171 (-)	855	WP_406820820.1	hypothetical protein	-
ACJA3S_RS03305 (ACJA3S_03305)	-	714431..715138 (-)	708	WP_406820821.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32016.27 Da
• Isoelectric Point: 8.2287

>NTDB_id=1074956 ACJA3S_RS03275 WP_406820817.1 709581..710447(-) (pilD) [Pseudomonas sp. KnCO4]
MTSWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLEQQWQREAQEVLGLPTTAQERFDLWLPASRCPHCGHRIRA
WENIPLISYLALRGRCSACKTRISPRYPLVEVASALLSLVVAWHFGVSLEAVLALPLTWCLLALSLIDARHQLLPDVLVL
PMLWLGLIVNAFGLYVPLASALWGAVIGYLSLWTVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSLVGA
LVGLCLLRLRRHALGTTMPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=1074956 ACJA3S_RS03275 WP_406820817.1 709581..710447(-) (pilD) [Pseudomonas sp. KnCO4]
ATGACTTCATGGACTTTGCTGGCGGAGCAGCCAGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGCTGGTGGGCAG
TTTCCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCAGCAATGGCAGCGTGAGGCGCAGGAGGTGTTGGGGC
TGCCGACAACGGCGCAGGAACGCTTCGACCTGTGGCTGCCAGCCTCGCGTTGCCCGCATTGCGGTCATCGAATCCGCGCG
TGGGAGAACATTCCGCTGATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAGACCCGCATCAGCCCGCGCTA
TCCGCTGGTGGAGGTGGCCAGCGCGCTGCTTTCGCTGGTGGTGGCCTGGCACTTTGGTGTTTCGCTCGAGGCCGTGCTGG
CACTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCAGGCACCAGCTGTTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTATGTGCCCCTGGCCAGTGCGCTGTGGGGGGCGGTGAT
CGGCTACCTCAGCCTGTGGACGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCA
AGCTGATGGCACTGATCGGCGCCTGGGGGGGCTGGCAGGTATTGCCGTTGACGCTGCTGCTGTCGTCGCTGGTCGGGGCG
CTGGTGGGGCTGTGCCTGCTGCGCCTGCGCCGGCATGCCTTGGGCACGACGATGCCGTTTGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACCTGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.069	96.181	0.51
pilD	Acinetobacter baumannii D1279779	51.601	97.569	0.503
pilD	Acinetobacter nosocomialis M2	51.601	97.569	0.503
pilD	Vibrio campbellii strain DS40M4	48.921	96.528	0.472
pilD	Neisseria gonorrhoeae MS11	48.699	93.403	0.455