Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ACCH06_RS18845 Genome accession   NZ_CP174157
Coordinates   3763473..3763592 (+) Length   39 a.a.
NCBI ID   WP_010332289.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3758473..3768592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS18825 - 3759196..3759896 (+) 701 Protein_3657 bacteriocin biosynthesis protein AlbG -
  ACCH06_RS18830 - 3759903..3761297 (-) 1395 WP_258728303.1 YncE family protein -
  ACCH06_RS18835 - 3761580..3762134 (+) 555 WP_088118182.1 YdhK family protein -
  ACCH06_RS18840 rapF 3762347..3763489 (+) 1143 WP_406589386.1 tetratricopeptide repeat protein Regulator
  ACCH06_RS18845 phrF 3763473..3763592 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACCH06_RS18850 - 3763846..3764325 (+) 480 WP_094232937.1 hypothetical protein -
  ACCH06_RS18855 - 3764476..3765264 (+) 789 WP_406589387.1 hypothetical protein -
  ACCH06_RS18860 - 3765251..3765925 (+) 675 WP_035175329.1 hypothetical protein -
  ACCH06_RS18865 - 3765935..3766732 (+) 798 WP_406590222.1 hypothetical protein -
  ACCH06_RS18870 - 3766735..3767382 (+) 648 WP_406589388.1 ABC transporter ATP-binding protein -
  ACCH06_RS18875 - 3767375..3767932 (+) 558 WP_406589389.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.08 Da        Isoelectric Point: 10.4997

>NTDB_id=1074714 ACCH06_RS18845 WP_010332289.1 3763473..3763592(+) (phrF) [Bacillus atrophaeus strain SHZ-24]
MKLKSKILLSCLALSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1074714 ACCH06_RS18845 WP_010332289.1 3763473..3763592(+) (phrF) [Bacillus atrophaeus strain SHZ-24]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTAAGCACAGTGTTTGTCGCAACGAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

85.185

69.231

0.59
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment