Detailed information NTG1074713

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACCH06_RS18840
• Genome accession: NZ_CP174157
• Coordinates: 3762347..3763489 (+)
• Length: 380 a.a.
• NCBI ID: WP_406589386.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain SHZ-24
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3757347..3768489

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCH06_RS18810	-	3757377..3757805 (-)	429	WP_199679882.1	DUF1934 domain-containing protein	-
ACCH06_RS18815	-	3758118..3758213 (+)	96	Protein_3655	subtilosin A family bacteriocin	-
ACCH06_RS18820	-	3758177..3759199 (+)	1023	WP_406589385.1	insulinase family protein	-
ACCH06_RS18825	-	3759196..3759896 (+)	701	Protein_3657	bacteriocin biosynthesis protein AlbG	-
ACCH06_RS18830	-	3759903..3761297 (-)	1395	WP_258728303.1	YncE family protein	-
ACCH06_RS18835	-	3761580..3762134 (+)	555	WP_088118182.1	YdhK family protein	-
ACCH06_RS18840	rapF	3762347..3763489 (+)	1143	WP_406589386.1	tetratricopeptide repeat protein	Regulator
ACCH06_RS18845	phrF	3763473..3763592 (+)	120	WP_010332289.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
ACCH06_RS18850	-	3763846..3764325 (+)	480	WP_094232937.1	hypothetical protein	-
ACCH06_RS18855	-	3764476..3765264 (+)	789	WP_406589387.1	hypothetical protein	-
ACCH06_RS18860	-	3765251..3765925 (+)	675	WP_035175329.1	hypothetical protein	-
ACCH06_RS18865	-	3765935..3766732 (+)	798	WP_406590222.1	hypothetical protein	-
ACCH06_RS18870	-	3766735..3767382 (+)	648	WP_406589388.1	ABC transporter ATP-binding protein	-
ACCH06_RS18875	-	3767375..3767932 (+)	558	WP_406589389.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45566.24 Da
• Isoelectric Point: 5.7334

>NTDB_id=1074713 ACCH06_RS18840 WP_406589386.1 3762347..3763489(+) (rapF) [Bacillus atrophaeus strain SHZ-24]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELAQIEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGVLDYYFNLFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM
DYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDFKQYEDAISHFKKAYTMAESEKQPQLMGRTLYNIGLCKNSQDQYESA
ITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYLSGPDEEAIK
KFFDFLESKMMYADLEDFALDVAKYYYGRENFQKASAYFLKVERVRQLIQGGVKLYEIEV

Nucleotide

• Length: 1143 bp

>NTDB_id=1074713 ACCH06_RS18840 WP_406589386.1 3762347..3763489(+) (rapF) [Bacillus atrophaeus strain SHZ-24]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATACTTACGAAGAGAAATCAAACAAGAGCTGGCTCAAATAGAAGAAGACCAGGATCTTCATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAAGAACAGCCGCGACTG
TCCGATTTACTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGATTATTACTTTAATCTCTTCAGAGG
CATGTACGAACTGGACCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTGTAA
AGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCCATG
GACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGCCATTCTTTGTT
TGCTACCAATTTCTTAGATTTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCAGAATCCG
AAAAACAGCCCCAATTAATGGGAAGAACGCTGTATAACATTGGGCTTTGCAAAAACAGCCAAGACCAGTATGAGTCAGCA
ATCACATATTTCAAAAGAGCCATATCTGTTTTTGAAGAAGCTAATATTCTTCCTTCTCTGCCCCAAGCTTATTTTTTGAT
TACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTATTCTAAAGAGG
CCGGAGATATCATTTACTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCTGGTCCGGATGAAGAGGCAATCAAG
AAATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTATTA
TGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAGCGAGTAAGGCAGCTTATTCAAGGAGGAGTGA
AGTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

• Tetratricopeptide repeat (TPR_12) (222-289)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	92.126	100	0.924
rapC	Bacillus subtilis subsp. subtilis str. 168	57.632	100	0.576