Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACCH06_RS17800 Genome accession   NZ_CP174157
Coordinates   3559632..3560321 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain SHZ-24     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3554632..3565321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS17765 - 3554811..3555293 (-) 483 WP_088118069.1 flagellar protein FlgN -
  ACCH06_RS17770 flgM 3555309..3555569 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCH06_RS17775 - 3555649..3556068 (-) 420 WP_406589310.1 TIGR03826 family flagellar region protein -
  ACCH06_RS17780 comFC 3556140..3556862 (-) 723 WP_406589311.1 double zinc ribbon domain-containing protein Machinery gene
  ACCH06_RS17785 - 3556826..3557122 (-) 297 WP_406589312.1 late competence development ComFB family protein -
  ACCH06_RS17790 comFA 3557179..3558576 (-) 1398 WP_406589313.1 ATP-dependent helicase ComFA Machinery gene
  ACCH06_RS17795 - 3558683..3559525 (-) 843 WP_003326716.1 DegV family protein -
  ACCH06_RS17800 degU 3559632..3560321 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCH06_RS17805 degS 3560398..3561561 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  ACCH06_RS17810 - 3561779..3562432 (+) 654 WP_003326713.1 YigZ family protein -
  ACCH06_RS17815 - 3562432..3563655 (+) 1224 WP_088118072.1 LCP family protein -
  ACCH06_RS17820 - 3563746..3564822 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1074708 ACCH06_RS17800 WP_003219701.1 3559632..3560321(-) (degU) [Bacillus atrophaeus strain SHZ-24]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1074708 ACCH06_RS17800 WP_003219701.1 3559632..3560321(-) (degU) [Bacillus atrophaeus strain SHZ-24]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGCAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment