Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACCH06_RS17790 Genome accession   NZ_CP174157
Coordinates   3557179..3558576 (-) Length   465 a.a.
NCBI ID   WP_406589313.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3552179..3563576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS17755 flgL 3552363..3553259 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  ACCH06_RS17760 flgK 3553271..3554794 (-) 1524 WP_406589309.1 flagellar hook-associated protein FlgK -
  ACCH06_RS17765 - 3554811..3555293 (-) 483 WP_088118069.1 flagellar protein FlgN -
  ACCH06_RS17770 flgM 3555309..3555569 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCH06_RS17775 - 3555649..3556068 (-) 420 WP_406589310.1 TIGR03826 family flagellar region protein -
  ACCH06_RS17780 comFC 3556140..3556862 (-) 723 WP_406589311.1 double zinc ribbon domain-containing protein Machinery gene
  ACCH06_RS17785 - 3556826..3557122 (-) 297 WP_406589312.1 late competence development ComFB family protein -
  ACCH06_RS17790 comFA 3557179..3558576 (-) 1398 WP_406589313.1 ATP-dependent helicase ComFA Machinery gene
  ACCH06_RS17795 - 3558683..3559525 (-) 843 WP_003326716.1 DegV family protein -
  ACCH06_RS17800 degU 3559632..3560321 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCH06_RS17805 degS 3560398..3561561 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  ACCH06_RS17810 - 3561779..3562432 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53064.72 Da        Isoelectric Point: 10.1524

>NTDB_id=1074707 ACCH06_RS17790 WP_406589313.1 3557179..3558576(-) (comFA) [Bacillus atrophaeus strain SHZ-24]
MQTELKKKPLFSADLQQFLHQRHLLRTEIPFSEELINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKISALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRAGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKHAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=1074707 ACCH06_RS17790 WP_406589313.1 3557179..3558576(-) (comFA) [Bacillus atrophaeus strain SHZ-24]
ATGCAGACTGAGTTGAAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATAAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCCGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGATCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGATGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCACATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACACCATCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGAAAAGAGAAAGTACAGC
AATTCAGGGCCGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGGCATAAAAA
ACATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-425)

Type III restriction enzyme, res subunit (ResIII)

(123-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.344

100

0.763

Multiple sequence alignment