Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACCH06_RS17780 Genome accession   NZ_CP174157
Coordinates   3556140..3556862 (-) Length   240 a.a.
NCBI ID   WP_406589311.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3551140..3561862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS17745 fliW 3551283..3551714 (-) 432 WP_061570800.1 flagellar assembly protein FliW -
  ACCH06_RS17750 - 3551749..3552315 (-) 567 WP_003326726.1 DUF6470 family protein -
  ACCH06_RS17755 flgL 3552363..3553259 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  ACCH06_RS17760 flgK 3553271..3554794 (-) 1524 WP_406589309.1 flagellar hook-associated protein FlgK -
  ACCH06_RS17765 - 3554811..3555293 (-) 483 WP_088118069.1 flagellar protein FlgN -
  ACCH06_RS17770 flgM 3555309..3555569 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCH06_RS17775 - 3555649..3556068 (-) 420 WP_406589310.1 TIGR03826 family flagellar region protein -
  ACCH06_RS17780 comFC 3556140..3556862 (-) 723 WP_406589311.1 double zinc ribbon domain-containing protein Machinery gene
  ACCH06_RS17785 - 3556826..3557122 (-) 297 WP_406589312.1 late competence development ComFB family protein -
  ACCH06_RS17790 comFA 3557179..3558576 (-) 1398 WP_406589313.1 ATP-dependent helicase ComFA Machinery gene
  ACCH06_RS17795 - 3558683..3559525 (-) 843 WP_003326716.1 DegV family protein -
  ACCH06_RS17800 degU 3559632..3560321 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCH06_RS17805 degS 3560398..3561561 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27622.81 Da        Isoelectric Point: 8.4180

>NTDB_id=1074706 ACCH06_RS17780 WP_406589311.1 3556140..3556862(-) (comFC) [Bacillus atrophaeus strain SHZ-24]
MCDEKKRGAKKLNCLLCDSQFSQSLTWRSLFLLEPDEKVCHPCKRQLQRITGTVCPSCGRPQNTNEKCPDCTEWESRIDR
GFLLSRNRSVYVYNEMMKESLARFKFRGDAELLHVFKTDFALEFSTVYPEKSYVLIPIPLSEERKAERGFNQSELLAKCL
DRPIIHSLTRLDNEKQSKKNKAERLLFKRVFDTEINSVGDMDVILIDDLYTTGATLHHAARCLLEKGKAGSVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1074706 ACCH06_RS17780 WP_406589311.1 3556140..3556862(-) (comFC) [Bacillus atrophaeus strain SHZ-24]
TTGTGTGATGAAAAAAAGAGAGGAGCAAAAAAGCTGAACTGCTTATTGTGTGATTCGCAGTTTTCTCAATCTCTTACGTG
GAGATCTTTATTTTTATTAGAGCCGGACGAAAAGGTCTGTCATCCGTGCAAAAGACAATTACAAAGGATCACAGGAACGG
TTTGCCCTTCATGCGGCAGACCTCAAAACACAAATGAAAAATGCCCCGATTGCACCGAATGGGAATCAAGGATTGATAGA
GGCTTCCTTTTAAGCCGAAACCGTTCTGTTTATGTATATAATGAGATGATGAAAGAATCGCTGGCCCGTTTTAAATTCAG
AGGAGACGCAGAGCTTTTGCATGTTTTTAAGACTGATTTTGCATTGGAGTTTTCAACTGTCTATCCTGAAAAAAGCTATG
TGCTTATTCCAATCCCGCTGAGTGAGGAACGGAAAGCAGAGCGCGGGTTTAACCAGTCAGAACTTCTGGCGAAATGTTTA
GACCGGCCCATCATTCATTCCCTAACCCGTCTGGATAATGAAAAACAATCCAAGAAAAACAAAGCGGAACGGCTCCTTTT
CAAACGTGTTTTTGATACTGAAATCAATTCCGTTGGAGATATGGATGTCATATTAATCGACGATCTTTATACCACTGGCG
CTACCTTACACCATGCAGCCCGCTGTTTATTGGAAAAAGGAAAAGCAGGCTCTGTGTCCTCTTTTACTTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

66.25

100

0.663

Multiple sequence alignment