Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RGT18_RS01445 | Genome accession | NZ_AP028934 |
| Coordinates | 302577..303059 (+) | Length | 160 a.a. |
| NCBI ID | WP_028078263.1 | Uniprot ID | A0A412PCS3 |
| Organism | Solobacterium moorei strain JCM10645 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 297577..308059
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RGT18_RS01420 (RGT18_02760) | uvrB | 297854..299830 (+) | 1977 | WP_028078267.1 | excinuclease ABC subunit UvrB | - |
| RGT18_RS01425 (RGT18_02770) | - | 299834..300358 (+) | 525 | WP_028078266.1 | hypothetical protein | - |
| RGT18_RS01430 (RGT18_02780) | - | 300458..301633 (+) | 1176 | WP_028078265.1 | pyridoxal phosphate-dependent aminotransferase | - |
| RGT18_RS01435 (RGT18_02790) | - | 301635..302126 (+) | 492 | WP_006526809.1 | Lrp/AsnC family transcriptional regulator | - |
| RGT18_RS01440 (RGT18_02800) | rpsF | 302272..302577 (+) | 306 | WP_028078264.1 | 30S ribosomal protein S6 | - |
| RGT18_RS01445 (RGT18_02810) | ssb | 302577..303059 (+) | 483 | WP_028078263.1 | single-stranded DNA-binding protein | Machinery gene |
| RGT18_RS01450 (RGT18_02820) | rpsR | 303077..303307 (+) | 231 | WP_006526812.1 | 30S ribosomal protein S18 | - |
| RGT18_RS01455 (RGT18_02830) | - | 303494..304822 (-) | 1329 | WP_338174854.1 | ISL3 family transposase | - |
| RGT18_RS01460 (RGT18_02840) | - | 305123..306451 (-) | 1329 | WP_338174770.1 | ISL3 family transposase | - |
| RGT18_RS01465 (RGT18_02850) | - | 306656..307348 (-) | 693 | WP_028078424.1 | LrgB family protein | - |
| RGT18_RS01470 (RGT18_02860) | - | 307341..307697 (-) | 357 | WP_028078423.1 | CidA/LrgA family protein | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17636.46 Da Isoelectric Point: 4.9109
>NTDB_id=107466 RGT18_RS01445 WP_028078263.1 302577..303059(+) (ssb) [Solobacterium moorei strain JCM10645]
MINRVVLVGRLTRDVEVRKTASGLSVATFTVACDRRMARGQDGNNQQSADFISCVAWRQAADFLGSYARKGALVGVEGRI
QTRSYDRDGQKVYVTEIVCDTVNLLESKSQSQSRAQNSSYQDNSYQQPYSQPKPSTNDDFVSDDFGAGIGMDISSDDLPF
MINRVVLVGRLTRDVEVRKTASGLSVATFTVACDRRMARGQDGNNQQSADFISCVAWRQAADFLGSYARKGALVGVEGRI
QTRSYDRDGQKVYVTEIVCDTVNLLESKSQSQSRAQNSSYQDNSYQQPYSQPKPSTNDDFVSDDFGAGIGMDISSDDLPF
Nucleotide
Download Length: 483 bp
>NTDB_id=107466 RGT18_RS01445 WP_028078263.1 302577..303059(+) (ssb) [Solobacterium moorei strain JCM10645]
ATGATTAACCGCGTTGTTTTGGTTGGCAGACTAACACGTGATGTGGAAGTTCGTAAGACAGCTAGTGGCTTATCCGTTGC
GACATTTACGGTTGCATGTGATCGTCGTATGGCTCGTGGACAGGATGGAAACAATCAACAGTCTGCAGATTTCATCAGTT
GTGTCGCTTGGCGACAAGCAGCCGATTTCTTAGGCTCATATGCACGTAAGGGTGCGTTAGTTGGTGTTGAAGGAAGAATC
CAAACACGTAGCTATGATCGTGATGGACAGAAGGTTTATGTTACAGAAATCGTTTGCGATACTGTAAACTTACTCGAATC
TAAGAGTCAATCACAGAGCAGAGCACAGAACAGCAGTTATCAAGACAACAGTTATCAACAGCCGTATTCACAACCAAAAC
CATCTACAAACGATGATTTTGTGAGTGATGACTTCGGCGCAGGAATCGGAATGGATATTTCCAGCGATGACCTGCCATTC
TAA
ATGATTAACCGCGTTGTTTTGGTTGGCAGACTAACACGTGATGTGGAAGTTCGTAAGACAGCTAGTGGCTTATCCGTTGC
GACATTTACGGTTGCATGTGATCGTCGTATGGCTCGTGGACAGGATGGAAACAATCAACAGTCTGCAGATTTCATCAGTT
GTGTCGCTTGGCGACAAGCAGCCGATTTCTTAGGCTCATATGCACGTAAGGGTGCGTTAGTTGGTGTTGAAGGAAGAATC
CAAACACGTAGCTATGATCGTGATGGACAGAAGGTTTATGTTACAGAAATCGTTTGCGATACTGTAAACTTACTCGAATC
TAAGAGTCAATCACAGAGCAGAGCACAGAACAGCAGTTATCAAGACAACAGTTATCAACAGCCGTATTCACAACCAAAAC
CATCTACAAACGATGATTTTGTGAGTGATGACTTCGGCGCAGGAATCGGAATGGATATTTCCAGCGATGACCTGCCATTC
TAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.243 |
100 |
0.5 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
39.106 |
100 |
0.437 |