Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   ACCH06_RS02135 Genome accession   NZ_CP174157
Coordinates   439148..439267 (+) Length   39 a.a.
NCBI ID   WP_004430266.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 434148..444267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS02120 - 435731..436417 (+) 687 WP_406589615.1 winged helix-turn-helix domain-containing protein -
  ACCH06_RS02125 - 436404..437822 (+) 1419 WP_258728609.1 HAMP domain-containing sensor histidine kinase -
  ACCH06_RS02130 rapC 438016..439164 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  ACCH06_RS02135 phrC 439148..439267 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACCH06_RS02140 - 439401..439508 (-) 108 WP_072053240.1 YjcZ family sporulation protein -
  ACCH06_RS02145 - 439712..439795 (-) 84 WP_370499808.1 YjcZ family sporulation protein -
  ACCH06_RS02150 - 439926..441290 (-) 1365 WP_277714329.1 aspartate kinase -
  ACCH06_RS02155 ceuB 441722..442672 (+) 951 WP_258728611.1 ABC transporter permease Machinery gene
  ACCH06_RS02160 - 442665..443612 (+) 948 WP_010789704.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4111.89 Da        Isoelectric Point: 7.9858

>NTDB_id=1074646 ACCH06_RS02135 WP_004430266.1 439148..439267(+) (phrC) [Bacillus atrophaeus strain SHZ-24]
MKLKSKLLIICLAAAAVFATVGVSNAEAPDYQVTERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1074646 ACCH06_RS02135 WP_004430266.1 439148..439267(+) (phrC) [Bacillus atrophaeus strain SHZ-24]
ATGAAATTGAAATCTAAATTGCTCATTATTTGTTTGGCTGCAGCTGCTGTGTTTGCAACAGTTGGAGTGTCCAATGCTGA
AGCGCCTGATTATCAGGTGACAGAAAGAGGAATGACGTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

75

100

0.769

Multiple sequence alignment