Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACI7YU_RS22270 Genome accession   NZ_CP173722
Coordinates   5016493..5017839 (+) Length   448 a.a.
NCBI ID   WP_056790472.1    Uniprot ID   A0A5E7NZ64
Organism   Pseudomonas siliginis strain P     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5011493..5022839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI7YU_RS22245 (ACI7YU_22255) pgeF 5011707..5012429 (-) 723 WP_130900963.1 peptidoglycan editing factor PgeF -
  ACI7YU_RS22250 (ACI7YU_22260) rluD 5012426..5013388 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACI7YU_RS22255 (ACI7YU_22265) - 5013540..5014556 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  ACI7YU_RS22260 (ACI7YU_22270) - 5014684..5014917 (+) 234 WP_056790465.1 PP0621 family protein -
  ACI7YU_RS22265 (ACI7YU_22275) pilS 5014907..5016496 (+) 1590 WP_150742245.1 PAS domain-containing sensor histidine kinase Regulator
  ACI7YU_RS22270 (ACI7YU_22280) pilR 5016493..5017839 (+) 1347 WP_056790472.1 sigma-54 dependent transcriptional regulator Regulator
  ACI7YU_RS22275 (ACI7YU_22285) thiO 5017932..5019032 (-) 1101 WP_353188948.1 glycine oxidase ThiO -
  ACI7YU_RS22280 (ACI7YU_22290) - 5019090..5019491 (-) 402 WP_150638498.1 type IV pilin protein -
  ACI7YU_RS22285 (ACI7YU_22295) - 5019507..5022596 (-) 3090 WP_150638496.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50132.37 Da        Isoelectric Point: 6.3600

>NTDB_id=1073840 ACI7YU_RS22270 WP_056790472.1 5016493..5017839(+) (pilR) [Pseudomonas siliginis strain P]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCSADGATADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1073840 ACI7YU_RS22270 WP_056790472.1 5016493..5017839(+) (pilR) [Pseudomonas siliginis strain P]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGTCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCGTTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGATTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATCTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCAATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCAGCCGAGCGTTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCCCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTTCTGGAACGCGCGCACACCTTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCTCGGCGGACGGGGCGACGGCTGATCTGACGCAGATCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAACGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E7NZ64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.33

98.884

0.775
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504

Multiple sequence alignment