Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACI7YU_RS22265 Genome accession   NZ_CP173722
Coordinates   5014907..5016496 (+) Length   529 a.a.
NCBI ID   WP_150742245.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain P     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5009907..5021496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI7YU_RS22245 (ACI7YU_22255) pgeF 5011707..5012429 (-) 723 WP_130900963.1 peptidoglycan editing factor PgeF -
  ACI7YU_RS22250 (ACI7YU_22260) rluD 5012426..5013388 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACI7YU_RS22255 (ACI7YU_22265) - 5013540..5014556 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  ACI7YU_RS22260 (ACI7YU_22270) - 5014684..5014917 (+) 234 WP_056790465.1 PP0621 family protein -
  ACI7YU_RS22265 (ACI7YU_22275) pilS 5014907..5016496 (+) 1590 WP_150742245.1 PAS domain-containing sensor histidine kinase Regulator
  ACI7YU_RS22270 (ACI7YU_22280) pilR 5016493..5017839 (+) 1347 WP_056790472.1 sigma-54 dependent transcriptional regulator Regulator
  ACI7YU_RS22275 (ACI7YU_22285) thiO 5017932..5019032 (-) 1101 WP_353188948.1 glycine oxidase ThiO -
  ACI7YU_RS22280 (ACI7YU_22290) - 5019090..5019491 (-) 402 WP_150638498.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58626.31 Da        Isoelectric Point: 6.8633

>NTDB_id=1073839 ACI7YU_RS22265 WP_150742245.1 5014907..5016496(+) (pilS) [Pseudomonas siliginis strain P]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1073839 ACI7YU_RS22265 WP_150742245.1 5014907..5016496(+) (pilS) [Pseudomonas siliginis strain P]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTCTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTTCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCATTGCTGGTGCAAGGGCTGATTCGTCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTAGAGGCGCTGAACGCGTTGATCCTACAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGTCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTCGTCGAGCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACACTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAAGCCCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCAACGAACGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGAAGTATGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACGAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597

Multiple sequence alignment