Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACI7YU_RS22170 | Genome accession | NZ_CP173722 |
| Coordinates | 5000759..5001631 (+) | Length | 290 a.a. |
| NCBI ID | WP_256811000.1 | Uniprot ID | - |
| Organism | Pseudomonas siliginis strain P | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4995759..5006631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI7YU_RS22145 (ACI7YU_22155) | - | 4995975..4996274 (+) | 300 | WP_406227480.1 | DUF2845 domain-containing protein | - |
| ACI7YU_RS22150 (ACI7YU_22160) | - | 4996539..4996892 (-) | 354 | WP_071173629.1 | BON domain-containing protein | - |
| ACI7YU_RS22155 (ACI7YU_22165) | pilA/pilAI | 4997188..4997610 (-) | 423 | WP_252876912.1 | pilin | Machinery gene |
| ACI7YU_RS22160 (ACI7YU_22170) | pilB | 4997837..4999537 (+) | 1701 | WP_056790439.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACI7YU_RS22165 (ACI7YU_22175) | pilC | 4999540..5000757 (+) | 1218 | WP_150638505.1 | type II secretion system F family protein | Machinery gene |
| ACI7YU_RS22170 (ACI7YU_22180) | pilD | 5000759..5001631 (+) | 873 | WP_256811000.1 | A24 family peptidase | Machinery gene |
| ACI7YU_RS22175 (ACI7YU_22185) | coaE | 5001628..5002251 (+) | 624 | WP_076564149.1 | dephospho-CoA kinase | - |
| ACI7YU_RS22180 (ACI7YU_22190) | yacG | 5002248..5002448 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| ACI7YU_RS22185 (ACI7YU_22195) | - | 5002456..5002671 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| ACI7YU_RS22190 (ACI7YU_22200) | - | 5002737..5003426 (-) | 690 | WP_130887102.1 | energy-coupling factor ABC transporter permease | - |
| ACI7YU_RS22195 (ACI7YU_22205) | - | 5003617..5004243 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| ACI7YU_RS22200 (ACI7YU_22210) | - | 5004240..5004767 (+) | 528 | WP_056790453.1 | MOSC domain-containing protein | - |
| ACI7YU_RS22205 (ACI7YU_22215) | - | 5004819..5004992 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| ACI7YU_RS22210 (ACI7YU_22220) | - | 5005056..5006354 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31897.13 Da Isoelectric Point: 7.3249
>NTDB_id=1073838 ACI7YU_RS22170 WP_256811000.1 5000759..5001631(+) (pilD) [Pseudomonas siliginis strain P]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAQDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAQDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=1073838 ACI7YU_RS22170 WP_256811000.1 5000759..5001631(+) (pilD) [Pseudomonas siliginis strain P]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCAAGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACTTACAACCTGATGCTGCCGCACTCCGCTTGCCCGCATTGCGGACACCGGATCCGC
CCGTGGGAAAATATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGTCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATATTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCAAGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACTTACAACCTGATGCTGCCGCACTCCGCTTGCCCGCATTGCGGACACCGGATCCGC
CCGTGGGAAAATATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGTCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATATTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.982 |
98.276 |
0.521 |
| pilD | Neisseria gonorrhoeae MS11 |
46.69 |
98.966 |
0.462 |
| pilD | Acinetobacter baumannii D1279779 |
47.08 |
94.483 |
0.445 |
| pilD | Acinetobacter nosocomialis M2 |
47.08 |
94.483 |
0.445 |