Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACIX56_RS04895 | Genome accession | NZ_CP173676 |
| Coordinates | 1058992..1059438 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain APL2303082E | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1053992..1064438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIX56_RS04870 (ACIX56_04870) | yacG | 1054899..1055087 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| ACIX56_RS04875 (ACIX56_04875) | coaE | 1055069..1055707 (-) | 639 | WP_005617375.1 | dephospho-CoA kinase | - |
| ACIX56_RS04880 (ACIX56_04880) | - | 1055729..1056367 (-) | 639 | WP_012478451.1 | prepilin peptidase | - |
| ACIX56_RS04885 (ACIX56_04885) | pilC | 1056394..1057596 (-) | 1203 | WP_005617379.1 | type II secretion system F family protein | Machinery gene |
| ACIX56_RS04890 (ACIX56_04890) | pilB | 1057580..1058974 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| ACIX56_RS04895 (ACIX56_04895) | pilA | 1058992..1059438 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACIX56_RS04900 (ACIX56_04900) | radA | 1059620..1060999 (+) | 1380 | WP_017357656.1 | DNA repair protein RadA | - |
| ACIX56_RS04905 (ACIX56_04905) | - | 1061043..1061276 (-) | 234 | WP_005615190.1 | YgjV family protein | - |
| ACIX56_RS04910 (ACIX56_04910) | folA | 1061403..1061891 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| ACIX56_RS04915 (ACIX56_04915) | proB | 1061978..1063069 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| ACIX56_RS04920 (ACIX56_04920) | - | 1063082..1063858 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=1073626 ACIX56_RS04895 WP_005597397.1 1058992..1059438(-) (pilA) [Actinobacillus pleuropneumoniae strain APL2303082E]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=1073626 ACIX56_RS04895 WP_005597397.1 1058992..1059438(-) (pilA) [Actinobacillus pleuropneumoniae strain APL2303082E]
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |