Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACAM22_RS03855 Genome accession   NZ_AP028929
Coordinates   864533..866515 (+) Length   660 a.a.
NCBI ID   WP_369606966.1    Uniprot ID   A0AAT9G0C2
Organism   Streptococcus sp. SN-1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 859533..871515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS03835 (MASAN616_07540) - 860384..861262 (+) 879 WP_000301221.1 F0F1 ATP synthase subunit gamma -
  ACAM22_RS03840 (MASAN616_07550) atpD 861462..862868 (+) 1407 WP_000094357.1 F0F1 ATP synthase subunit beta -
  ACAM22_RS03845 (MASAN616_07560) - 862879..863298 (+) 420 WP_000068043.1 F0F1 ATP synthase subunit epsilon -
  ACAM22_RS03850 (MASAN616_07570) - 863343..864356 (-) 1014 WP_261074938.1 lactonase family protein -
  ACAM22_RS03855 (MASAN616_07580) amiA3 864533..866515 (+) 1983 WP_369606966.1 peptide ABC transporter substrate-binding protein Regulator
  ACAM22_RS03860 (MASAN616_07590) - 866633..867799 (+) 1167 WP_077805236.1 AI-2E family transporter -
  ACAM22_RS03865 (MASAN616_07600) - 867789..869018 (+) 1230 WP_285299037.1 hypothetical protein -
  ACAM22_RS03870 (MASAN616_07610) - 869327..869851 (+) 525 WP_285299035.1 MgtC/SapB family protein -
  ACAM22_RS03875 (MASAN616_07620) gla 870114..870983 (+) 870 WP_049491488.1 aquaglyceroporin Gla -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72859.24 Da        Isoelectric Point: 4.9737

>NTDB_id=107325 ACAM22_RS03855 WP_369606966.1 864533..866515(+) (amiA3) [Streptococcus sp. SN-1]
MKKRVFLAAGVAVLSAAVLAACSFGNANKEAKKPVTYAYVFSSDPSTLDYTVSGNVSTKQVTGNVIDGLLENDQYGNLVP
SVAEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAANKKSQALYLVQESIKGLDDYVNGKTTDFSTV
GVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVNEDFLASKGDDFGKPTDVTSILYNGPFLLKGLTSKSSIEMTKNQNYW
DKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYISTNIDRVNYNHTA
KTSDTEKTSTKKALLNKDFRQALAFAVDRKAGISQVFGDEVGPRKLRTSFTPPTFVQVGDQTFGQVTKTELDKLDNVWKD
VSLDDAQDSLHNVDKAKAKFEAAKKTLQADGVQFPIHLDLPISSSNPDFIRQVQSYKQSIEEALGSDNVVVDIQQVSDDE
LGSMTTLATSNANTDWDINAVSGWTPDFADPSTYLDVFDPTSGPSLLSALGVAPGTDNPVIKTVGLDKYKELIDDANSEK
TDLQKRYSKYAKAQAWLSDSALVIPVYSDGAQMLVTKMVPGSGAGGWVGDKTSENSYKYLKIQDKIVTTKEMDEFRKKFA
DEKAKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=107325 ACAM22_RS03855 WP_369606966.1 864533..866515(+) (amiA3) [Streptococcus sp. SN-1]
ATGAAAAAACGTGTTTTCTTAGCAGCAGGAGTTGCTGTACTCTCGGCAGCTGTCCTAGCAGCGTGTTCATTTGGTAATGC
TAATAAAGAAGCAAAAAAACCAGTTACTTATGCCTATGTATTTTCATCAGATCCTTCGACTCTGGATTATACAGTTTCTG
GAAATGTCAGCACTAAACAGGTCACAGGTAACGTTATTGACGGTTTGCTTGAAAATGACCAATATGGGAATCTTGTTCCA
TCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAATCCGTCAGGGTGTCAAATGGTATAC
CAATGAGGGGGAAGAGTATGGTGAAGTCAAGGCTCAAGACTTTGTAACTGGTCTGAAGCATGCAGCAAATAAAAAATCAC
AGGCCCTCTATTTGGTACAGGAATCAATTAAAGGATTGGATGACTATGTAAATGGGAAAACAACGGATTTTTCTACTGTT
GGTGTAAAAGCAACAGACGATTATACTGTTGTTTATACTTTGAACCATCCAGAATCTTTCTGGAATTCAAAAACAACAAT
GGGAGTTCTTGCACCAGTCAATGAAGACTTTTTAGCTTCTAAAGGAGATGACTTTGGTAAACCAACGGATGTAACGAGCA
TTCTATACAATGGGCCATTTCTCCTCAAAGGTCTTACATCTAAGTCTTCTATAGAAATGACCAAAAACCAAAATTATTGG
GATAAGCAGAATGTCTTTATTGATGATATCAAGTTATCCTTCTTTGATGGTCAAGATGCAGACTCTCTAGGACGCGGTTT
TGATGAGGGACACTATCCAGCTGCACCACTCTTTAAAAACTCTGCTAACTATGAACGTCTAAAAGAAAAATACAAGGATA
ATATTGTGTATGGTCAACAGCGTGGAGGAGTTTTTTATATCTCAACCAATATCGACCGTGTAAATTACAATCACACTGCT
AAAACAAGTGATACAGAAAAAACTTCTACTAAGAAAGCCTTGTTAAACAAAGATTTCCGTCAAGCCTTGGCTTTTGCGGT
AGATCGTAAAGCAGGGATCTCTCAAGTATTTGGTGATGAAGTAGGACCTCGTAAGTTACGGACAAGTTTCACTCCTCCAA
CATTTGTTCAAGTAGGAGATCAAACATTTGGTCAAGTTACTAAGACAGAATTGGATAAATTGGATAATGTCTGGAAAGAT
GTTAGTCTTGATGATGCCCAAGATTCACTTCATAATGTAGACAAGGCTAAAGCTAAGTTTGAAGCTGCTAAGAAAACCCT
TCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATTTGCCAATTTCTTCATCAAATCCAGATTTTATTCGTCAGGTTC
AGTCTTATAAACAATCCATTGAGGAAGCCTTAGGCTCTGATAATGTAGTTGTTGATATTCAACAAGTTTCTGATGACGAA
TTGGGAAGTATGACTACTCTAGCTACTTCCAATGCAAATACTGACTGGGATATTAATGCAGTCAGTGGTTGGACTCCAGA
CTTTGCAGATCCATCGACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTAAGTGCTCTTGGTGTGGCAC
CAGGAACAGACAATCCAGTTATTAAAACAGTTGGATTGGATAAATACAAAGAACTGATTGATGATGCAAATAGTGAGAAA
ACAGACCTTCAAAAACGTTATTCTAAATATGCTAAGGCCCAAGCTTGGTTGTCAGATAGTGCACTTGTTATTCCAGTATA
CTCTGATGGTGCTCAAATGCTAGTGACGAAAATGGTTCCTGGCAGTGGTGCCGGTGGCTGGGTAGGTGACAAGACTAGTG
AAAATAGCTACAAGTATCTGAAAATCCAAGATAAGATTGTCACTACTAAAGAAATGGATGAGTTCCGCAAGAAATTTGCT
GATGAAAAAGCCAAATCAAACGCAGATTATCAGAAGAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.985

100

0.552
  amiA Streptococcus salivarius strain HSISS4

54.463

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

54.23

100

0.544

Multiple sequence alignment