Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACI51W_RS24245 Genome accession   NZ_CP173616
Coordinates   4633317..4635542 (+) Length   741 a.a.
NCBI ID   WP_256592508.1    Uniprot ID   -
Organism   Pseudomonas marginalis strain M13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4628317..4640542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI51W_RS24230 (ACI51W_24240) - 4630577..4631305 (+) 729 WP_027607324.1 response regulator transcription factor -
  ACI51W_RS24235 (ACI51W_24245) - 4631295..4632662 (+) 1368 WP_043293730.1 sensor histidine kinase -
  ACI51W_RS24240 (ACI51W_24250) - 4632666..4633181 (-) 516 WP_027607322.1 DUF2062 domain-containing protein -
  ACI51W_RS24245 (ACI51W_24255) comA 4633317..4635542 (+) 2226 WP_256592508.1 ComEC/Rec2 family competence protein Machinery gene
  ACI51W_RS24250 (ACI51W_24260) exbB 4635652..4636287 (+) 636 WP_027607320.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACI51W_RS24255 (ACI51W_24265) - 4636284..4636712 (+) 429 WP_027607319.1 biopolymer transporter ExbD -
  ACI51W_RS24260 (ACI51W_24270) lpxK 4636712..4637722 (+) 1011 WP_074847165.1 tetraacyldisaccharide 4'-kinase -
  ACI51W_RS24265 (ACI51W_24275) - 4637746..4637931 (+) 186 WP_003174668.1 Trm112 family protein -
  ACI51W_RS24270 (ACI51W_24280) kdsB 4637928..4638692 (+) 765 WP_065927093.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACI51W_RS24275 (ACI51W_24285) - 4638692..4639156 (+) 465 WP_027607316.1 low molecular weight protein-tyrosine-phosphatase -
  ACI51W_RS24280 (ACI51W_24290) murB 4639153..4640172 (+) 1020 WP_108572697.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80420.35 Da        Isoelectric Point: 10.5507

>NTDB_id=1073219 ACI51W_RS24245 WP_256592508.1 4633317..4635542(+) (comA) [Pseudomonas marginalis strain M13]
MKTGMFALALGLLALRFLPALPSTGWLIAMLVLALMLLPFRTSPLAFFLLGLSWACISAQWALDDRLRPVLDGQTRWLEG
RVTGLPQQTGTGVRFELADSQARNARLPKRIRVFWHGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARHAWRDTVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGF
VALLARYGCWPRTWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALNGVLILEPL
ASLQPGFWLSFMAVAVLVLGFGGRLGPWSVWQAWTRPQCLIAVGLFPVLLVLGLPVSVSAPLANLVAVPWISLVVLPLAL
LGSALLPLPYAGEGLLWLAGGALDGLFRGLAWLAGLMPAWIPAEVPLGYWLISLVGAVLLLLPSGVPFRPLGLPLLLLAV
FPPRELVPHGRVEVVQLDVGQGQALILRTRHHTLLYDAGPRSGTVDLGARVVVPALKKLGVGTLDMMLLSHADADHAGGA
SAVARGLPIRRVVGGETEGLPGFLATQPCVSGERWEWDGVAFELWQWPDAIDGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLASSLAVRTDWLQSPHHGSRSSSSWPFLQRLAPTSVLISRGRGNAFGHPHPQVVERYQRLGSQIYDSAEQGAVRVQL
GAFQPPTVARSQRRFWRETLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1073219 ACI51W_RS24245 WP_256592508.1 4633317..4635542(+) (comA) [Pseudomonas marginalis strain M13]
ATGAAGACAGGGATGTTCGCGCTCGCGCTGGGGTTGCTTGCCTTGCGTTTTTTACCGGCGTTGCCGTCGACGGGGTGGCT
GATAGCCATGTTGGTGCTGGCATTGATGCTATTGCCCTTTCGTACGTCGCCACTGGCATTTTTCCTGCTGGGCTTGAGCT
GGGCCTGCATCAGTGCGCAGTGGGCGCTGGATGATCGACTACGGCCGGTGCTGGATGGCCAGACGCGATGGCTGGAAGGC
CGTGTAACCGGGTTACCGCAGCAGACAGGGACGGGCGTGCGTTTTGAGCTGGCCGACAGCCAGGCGCGCAACGCCCGGTT
GCCCAAGCGCATCCGGGTGTTTTGGCACGGCGGGCCGCCGGTACGCAGTGGCGAGCGCTGGCGTCTGGCCGTGACGCTGA
AACGGCCTGCCGGGCTGCTCAATTTTCACGGTTTCGATCAGGAGGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACCGGC
TCGGTGAAGGATGGTGAGCGCCTGGCGCCGGCGCGTCATGCCTGGCGTGACACGGTCCGCCAACGCCTGATGGCGGTGGA
CGCCCAAGGCCGCGAGGCGGGCCTGGCGGCTTTGGTGCTGGGGGATGGCTCCGGGCTGGCGGCCGAAGACTGGCAGGTGT
TGCAGGACACTGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCTTGCTGGCGGGGTTGATCTACGGCTTT
GTCGCGCTACTTGCACGCTACGGCTGCTGGCCCCGTACCTGGCCGTGGCTGCCTTGGGCGTGCGGCCTGGCGTTTGCCGC
CGCGCTGGGGTACGGCCTGCTGGCAGGGTTTGGCGTGCCGGTGCAACGGGCCTGCGTCATGGTGGGGCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGTCATCTGGGCTTCTGGTGGCCGTTGTTGCTGGCACTCAATGGCGTGCTGATCCTGGAGCCACTG
GCCAGCCTGCAACCCGGATTCTGGCTGTCCTTCATGGCTGTCGCGGTGCTGGTCCTGGGATTTGGTGGGCGGTTGGGGCC
GTGGAGTGTCTGGCAGGCATGGACACGTCCCCAGTGCTTGATTGCCGTTGGTCTGTTTCCTGTGTTGCTGGTGCTCGGCT
TGCCCGTCAGCGTCAGTGCGCCGCTGGCCAACCTGGTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCTTG
CTGGGGAGCGCATTGTTGCCGCTGCCGTATGCGGGTGAGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTTGACGGGTTGTT
CCGGGGCTTGGCATGGCTCGCTGGGCTAATGCCTGCCTGGATACCGGCCGAGGTGCCCCTGGGTTACTGGCTGATCAGCC
TGGTCGGCGCGGTGCTGTTACTGCTGCCCAGCGGCGTGCCGTTTCGGCCCCTGGGCTTGCCGCTGCTGTTGTTGGCCGTG
TTTCCACCCCGCGAGCTCGTGCCCCATGGGCGGGTGGAGGTGGTGCAACTGGATGTCGGGCAAGGTCAGGCCTTGATCCT
GCGTACCCGCCATCACACGTTGCTCTACGATGCCGGCCCGCGTTCGGGGACGGTTGACCTTGGTGCCCGTGTGGTAGTGC
CTGCGTTGAAAAAACTCGGCGTCGGGACGCTGGATATGATGCTGCTGAGCCACGCCGACGCCGATCATGCCGGTGGGGCG
TCGGCTGTGGCCCGAGGGTTGCCGATCCGGCGTGTCGTGGGCGGTGAAACCGAGGGGTTGCCCGGGTTTCTCGCCACCCA
GCCCTGTGTCAGCGGCGAACGGTGGGAGTGGGACGGTGTGGCATTCGAGCTGTGGCAGTGGCCTGATGCGATTGATGGCA
ATCCCAAGTCCTGTGTTCTGCAGGTCCAGGCCAATGGTGAGCGGCTGCTGCTCACGGGGGATATTGATCGGGCTGCCGAG
CGAGCATTTCTCGCGTCTTCGCTGGCCGTGCGCACCGATTGGCTGCAATCGCCTCACCATGGCAGCCGCAGTTCGTCGTC
CTGGCCTTTTCTACAGCGGCTGGCGCCCACGTCGGTGCTGATTTCCCGTGGGCGTGGCAATGCGTTCGGCCATCCTCATC
CGCAGGTAGTAGAGCGCTACCAGCGACTGGGCAGCCAGATATACGACAGTGCCGAGCAGGGCGCGGTGCGTGTGCAATTA
GGGGCTTTCCAGCCACCGACTGTTGCGCGTAGTCAACGCCGTTTTTGGCGCGAAACGTTACCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-646)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.556

97.166

0.588
  comA Ralstonia pseudosolanacearum GMI1000

35.435

100

0.379

Multiple sequence alignment