Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACI51W_RS24250 Genome accession   NZ_CP173616
Coordinates   4635652..4636287 (+) Length   211 a.a.
NCBI ID   WP_027607320.1    Uniprot ID   A0A7Y1IKE2
Organism   Pseudomonas marginalis strain M13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4630652..4641287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI51W_RS24235 (ACI51W_24245) - 4631295..4632662 (+) 1368 WP_043293730.1 sensor histidine kinase -
  ACI51W_RS24240 (ACI51W_24250) - 4632666..4633181 (-) 516 WP_027607322.1 DUF2062 domain-containing protein -
  ACI51W_RS24245 (ACI51W_24255) comA 4633317..4635542 (+) 2226 WP_256592508.1 ComEC/Rec2 family competence protein Machinery gene
  ACI51W_RS24250 (ACI51W_24260) exbB 4635652..4636287 (+) 636 WP_027607320.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACI51W_RS24255 (ACI51W_24265) - 4636284..4636712 (+) 429 WP_027607319.1 biopolymer transporter ExbD -
  ACI51W_RS24260 (ACI51W_24270) lpxK 4636712..4637722 (+) 1011 WP_074847165.1 tetraacyldisaccharide 4'-kinase -
  ACI51W_RS24265 (ACI51W_24275) - 4637746..4637931 (+) 186 WP_003174668.1 Trm112 family protein -
  ACI51W_RS24270 (ACI51W_24280) kdsB 4637928..4638692 (+) 765 WP_065927093.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACI51W_RS24275 (ACI51W_24285) - 4638692..4639156 (+) 465 WP_027607316.1 low molecular weight protein-tyrosine-phosphatase -
  ACI51W_RS24280 (ACI51W_24290) murB 4639153..4640172 (+) 1020 WP_108572697.1 UDP-N-acetylmuramate dehydrogenase -
  ACI51W_RS24285 (ACI51W_24295) - 4640236..4640907 (-) 672 WP_027607314.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22856.99 Da        Isoelectric Point: 7.3613

>NTDB_id=1073220 ACI51W_RS24250 WP_027607320.1 4635652..4636287(+) (exbB) [Pseudomonas marginalis strain M13]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1073220 ACI51W_RS24250 WP_027607320.1 4635652..4636287(+) (exbB) [Pseudomonas marginalis strain M13]
GTGTGGGAATTGGTCAAATCTGGCGGCTGGATGATGTTGCCCATCATCCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTTTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAACTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCGCCCCTGGGTGAGATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTTATCCATGAACTTGAGCGCTATAT
CAACGCCCTCGGCACCATCGCAGCCATGGCGCCGTTGCTCGGCTTGCTGGGGACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCCGTGCTGGCCGGCGGTATCTCCAAGGCCCTGATTACCACGGCG
GCGGGCCTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAACTGGTGGTCGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y1IKE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment